(Q42949317)

English

Analysis of the DNA-binding sequence specificity of the archaeal transcriptional regulator Ss-LrpB from Sulfolobus solfataricus by systematic mutagenesis and high resolution contact probing

scientific article published on 18 December 2006

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

Analysis of the DNA-binding sequence specificity of the archaeal transcriptional regulator Ss-LrpB from Sulfolobus solfataricus by systematic mutagenesis and high resolution contact probing (English)

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

Sulfolobus solfataricus

object named as

Sulfolobus solfataricus

1 reference

based on heuristic

inferred from title

author name string

Eveline Peeters

1

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

Carine Wartel

2

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

Dominique Maes

3

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

Daniel Charlier

4

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

language of work or name

0 references

publication date

18 December 2006

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

35

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

2

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

623-633

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

Structural insight into gene transcriptional regulation and effector binding by the Lrp/AsnC family.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

enoLOGOS: a versatile web tool for energy normalized sequence logos

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

How do site-specific DNA-binding proteins find their targets?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

The archaeal feast/famine regulatory protein: Potential roles of its assembly forms for regulating transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

The Lrp family of transcriptional regulators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

Additivity in protein-DNA interactions: how good an approximation is it?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

Crystal structure of the Lrp-like transcriptional regulator from the archaeon Pyrococcus furiosus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

A thermostable platform for transcriptional regulation: the DNA-binding properties of two Lrp homologs from the hyperthermophilic archaeon Methanococcus jannaschii

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

Purification and characterization of Sa-lrp, a DNA-binding protein from the extreme thermoacidophilic archaeon Sulfolobus acidocaldarius homologous to the bacterial global transcriptional regulator Lrp.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

Specificity, free energy and information content in protein-DNA interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

Information analysis of sequences that bind the replication initiator RepA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

A consensus sequence for binding of Lrp to DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

57 Sequencing end-labeled DNA with base-specific chemical cleavages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

Nuclease activity of 1,10-phenanthroline-copper ion. Conformational analysis and footprinting of the lac operon.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

Footprinting DNA-protein complexes in situ following gel retardation assays using 1,10-phenanthroline-copper ion: Escherichia coli RNA polymerase-lac promoter complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

Missing contact probing of DNA-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

Sequence logos: a new way to display consensus sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

Determination of binding constants for cooperative site-specific protein-DNA interactions using the gel mobility-shift assay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

Uracil interference, a rapid and general method for defining protein-DNA interactions involving the 5-methyl group of thymines: the GCN4-DNA complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

27 May 2018

Protein-nucleic acid recognition: statistical analysis of atomic interactions and influence of DNA structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

16 August 2018

High resolution contact probing of the Lrp-like DNA-binding protein Ss-Lrp from the hyperthermoacidophilic crenarchaeote Sulfolobus solfataricus P2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

16 August 2018

The Sulfolobus solfataricus Lrp-like protein LysM regulates lysine biosynthesis in response to lysine availability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

16 August 2018

Quantitative analysis of DNA binding by the Escherichia coli arginine repressor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

16 August 2018

Transcriptional regulation in Archaea

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1802622

3 November 2018

Ss-LrpB from Sulfolobus solfataricus condenses about 100 base pairs of its own operator DNA into globular nucleoprotein complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17178749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ss-LrpB, a novel Lrp-like regulator of Sulfolobus solfataricus P2, binds cooperatively to three conserved targets in its own control region

1 reference

https://pubmed.ncbi.nlm.nih.gov/17178749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformational analysis of lac promoters using the nuclease activity of 1,10-phenanthroline-copper ion

1 reference

https://pubmed.ncbi.nlm.nih.gov/17178749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The arginine repressor of Escherichia coli K-12 makes direct contacts to minor and major groove determinants of the operators

1 reference

https://pubmed.ncbi.nlm.nih.gov/17178749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A novel ligand-binding domain involved in regulation of amino acid metabolism in prokaryotes

1 reference

https://pubmed.ncbi.nlm.nih.gov/17178749

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKL1095

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 November 2017

ResearchGate publication ID

0 references

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