(Q42957734)

11 November 2017

Ion-induced folding of a kink turn that departs from the conventional sequence (English)

1 reference

11 November 2017

Kersten T Schroeder

1

1 reference

11 November 2017

David M J Lilley

series ordinal

2

1 reference

11 November 2017

language of work or name

English

0 references

publication date

1 November 2009

1 reference

11 November 2017

Nucleic Acids Research

1 reference

11 November 2017

37

1 reference

11 November 2017

21

1 reference

11 November 2017

7281-7289

1 reference

Folding of the SAM aptamer is determined by the formation of a K-turn-dependent pseudoknot

11 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Dynamic interactions within sub-complexes of the H/ACA pseudouridylation guide RNP.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

The role of specific 2'-hydroxyl groups in the stabilization of the folded conformation of kink-turn RNA.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Structure of the S-adenosylmethionine riboswitch regulatory mRNA element

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Structures of the bacterial ribosome at 3.5 A resolution

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Detecting protein-induced folding of the U4 snRNA kink-turn by single-molecule multiparameter FRET measurements

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Molecular basis for RNA kink-turn recognition by the h15.5K small RNP protein

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Induced fit of RNA on binding the L7Ae protein to the kink-turn motif

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Loss of G-A base pairs is insufficient for achieving a large opening of U4 snRNA K-turn motif

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Hinge-like motions in RNA kink-turns: the role of the second a-minor motif and nominally unpaired bases

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Internal loop mutations in the ribosomal protein L30 binding site of the yeast L30 RNA transcript

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

The kink-turn motif in RNA is dimorphic, and metal ion-dependent

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Biochemical characterization of the kink-turn RNA motif.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

The kink-turn: a new RNA secondary structure motif

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Geometric nomenclature and classification of RNA base pairs

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Importance of specific nucleotides in the folding of the natural form of the hairpin ribozyme

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Structure of the 30S ribosomal subunit

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Kinking of DNA and RNA helices by bulged nucleotides observed by fluorescence resonance energy transfer

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Fluorescence resonance energy transfer and nucleic acids

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 A resolution

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

RNA Kink-Turns as Molecular Elbows: Hydration, Cation Binding, and Large-Scale Dynamics

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2790904

The importance of G.A hydrogen bonding in the metal ion- and protein-induced folding of a kink turn RNA

30 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19783814

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A novel loop-loop recognition motif in the yeast ribosomal protein L30 autoregulatory RNA complex

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19783814

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

RNA bulges and the helical periodicity of double-stranded RNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19783814

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP791

1 reference

11 November 2017

1 reference

11 November 2017

PubMed publication ID

19783814

1 reference