(Q43033029)

12 November 2017

PairsDB atlas of protein sequence space (English)

1 reference

12 November 2017

1

1 reference

12 November 2017

Eija Korpelainen

2

1 reference

12 November 2017

Taavi Hupponen

3

1 reference

12 November 2017

Kimmo Mattila

4

1 reference

12 November 2017

Vesa Ollikainen

5

1 reference

12 November 2017

Liisa Holm

6

1 reference

12 November 2017

language of work or name

English

0 references

publication date

5 November 2007

1 reference

12 November 2017

Nucleic Acids Research

1 reference

12 November 2017

36

1 reference

12 November 2017

Database issue

1 reference

12 November 2017

D276-80

1 reference

New developments in the InterPro database

12 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

Pfam: clans, web tools and services

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

Accurate detection of very sparse sequence motifs

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

ProbCons: Probabilistic consistency-based multiple sequence alignment

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

ADDA: a domain database with global coverage of the protein universe

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

SCOP database in 2004: refinements integrate structure and sequence family data

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

Domains, motifs and clusters in the protein universe

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

CDD: a database of conserved domain alignments with links to domain three-dimensional structure

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

Clustering of highly homologous sequences to reduce the size of large protein databases

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

Towards a covering set of protein family profiles

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

T-Coffee: A novel method for fast and accurate multiple sequence alignment

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

COFFEE: an objective function for multiple sequence alignments

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

The HSSP database of protein structure-sequence alignments.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

Predicting coiled coils from protein sequences

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

The global trace graph, a novel paradigm for searching protein sequence databases.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

Bayesian search of functionally divergent protein subgroups and their function specific residues.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

Detecting putative orthologs.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

Exhaustive enumeration of protein domain families

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

RSDB: representative protein sequence databases have high information content.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

Removing near-neighbour redundancy from large protein sequence collections

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238971

Sensitive pattern discovery with 'fuzzy' alignments of distantly related proteins

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17986464

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKM879

1 reference

journals/nar/HegerKHMOH08

12 November 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

12 November 2017

PubMed publication ID

17986464

1 reference