(Q43066351)

13 November 2017

Purifying selection, sequence composition, and context-specific indel mutations shape intraspecific variation in a bacterial endosymbiont (English)

1 reference

13 November 2017

Intraspecific variation

1 reference

based on heuristic

inferred from title

author

Jennifer J. Wernegreen

series ordinal

2

object named as

Jennifer J Wernegreen

1 reference

13 November 2017

Laura E Williams

1

1 reference

13 November 2017

24 November 2011

1 reference

Genome Biology and Evolution

13 November 2017

1 reference

13 November 2017

4

1 reference

13 November 2017

1

1 reference

13 November 2017

44-51

1 reference

PMCID

3268670

maintained by WikiProject

13 November 2017

1 reference

Bacterial symbionts in insects or the story of communities affecting communities.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Unprecedented loss of ammonia assimilation capability in a urease-encoding bacterial mutualist

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

VariantClassifier: A hierarchical variant classifier for annotated genomes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Chromosome stability and gene loss in cockroach endosymbionts

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

BEDTools: a flexible suite of utilities for comparing genomic features

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

VarScan: variant detection in massively parallel sequencing of individual and pooled samples

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Fast and accurate short read alignment with Burrows-Wheeler transform

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

DNAPlotter: circular and linear interactive genome visualization

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Genomics and evolution of heritable bacterial symbionts

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Breeding system, colony structure, and genetic differentiation in the Camponotus festinatus species complex of carpenter ants

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Chromosomal stasis versus plasmid plasticity in aphid endosymbiont Buchnera aphidicola.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

The replication-related organization of bacterial genomes.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

The genome sequence of Blochmannia floridanus: comparative analysis of reduced genomes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Genome sequence of the endocellular obligate symbiont of tsetse flies, Wigglesworthia glossinidia

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

50 Million Years of Genomic Stasis in Endosymbiotic Bacteria

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Replication orientation affects the rate and direction of bacterial gene evolution

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

PAML: a program package for phylogenetic analysis by maximum likelihood

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Population and colony structure of the carpenter ant Camponotus floridanus

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Patterns and rates of nucleotide substitution, insertion and deletion in the endosymbiont of ants Blochmannia floridanus.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Variation in the ratio of nucleotide substitution and indel rates across genomes in mammals and bacteria.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

The dynamics and time scale of ongoing genomic erosion in symbiotic bacteria

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Strong asymmetric mutation bias in endosymbiont genomes coincide with loss of genes for replication restart pathways

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

Evolution rates of genes on leading and lagging DNA strands

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3268670

3 November 2018

Identifiers

DOI

10.1093/GBE/EVR128

1 reference

13 November 2017

1 reference

13 November 2017

1 reference

PMCID

3268670