(Q43103662)

13 November 2017

SARA: a server for function annotation of RNA structures (English)

1 reference

13 November 2017

1

1 reference

13 November 2017

2

1 reference

PMC publication ID

2703911

13 November 2017

language of work or name

English

0 references

publication date

29 May 2009

1 reference

13 November 2017

Nucleic Acids Research

1 reference

13 November 2017

37

1 reference

13 November 2017

Web Server issue

1 reference

13 November 2017

W260-5

1 reference

Analysis and classification of RNA tertiary structures

13 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

SARSA: a web tool for structural alignment of RNA using a structural alphabet

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

Predicting protein function from sequence and structure

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

Evaluating and learning from RNA pseudotorsional space: quantitative validation of a reduced representation for RNA structure

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

Recent progress in measuring structural similarity between proteins

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

The ARTS web server for aligning RNA tertiary structures

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

Automated protein function prediction--the genomic challenge

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

Pseudoknots: RNA structures with diverse functions

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

The URMS-RMS hybrid algorithm for fast and sensitive local protein structure alignment.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

siRNAs: applications in functional genomics and potential as therapeutics

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

Prediction of protein function from protein sequence and structure

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

MicroRNAs: genomics, biogenesis, mechanism, and function

25 May 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

25 May 2018

https://api.crossref.org/works/10.1093%2FNAR%2FGKP433

Automatic prediction of protein function

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

SCOR: Structural Classification of RNA, version 2.0.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

RNA structure comparison, motif search and discovery using a reduced representation of RNA conformational space

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

The chemical repertoire of natural ribozymes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

MaxSub: an automated measure for the assessment of protein structure prediction quality.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

Assessing the accuracy of prediction algorithms for classification: an overview

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

Fast detection of common geometric substructure in proteins.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

A general method applicable to the search for similarities in the amino acid sequence of two proteins

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

Rapid and sensitive sequence comparison with FASTP and FASTA

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

RNA structure alignment by a unit-vector approach.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

Structural genomics of RNA.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

Unit-vector RMS (URMS) as a tool to analyze molecular dynamics trajectories.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703911

The expanding world of small RNAs

15 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKP433

The brave new world of RNA

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKP433

21 January 2018

1 reference

12 December 2020

Do aligned sequences share the same fold?

1 reference

PubMed

12 December 2020

ARTS: alignment of RNA tertiary structures

1 reference

PubMed

12 December 2020

Practical limits of function prediction

1 reference

PubMed

12 December 2020

Identifiers

DOI

10.1093/NAR/GKP433

1 reference

journals/nar/CapriottiM09

13 November 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

2703911

13 November 2017

PubMed publication ID

19483098

1 reference

PMC publication ID

2703911