(Q43116032)

14 November 2017

Voronoia: analyzing packing in protein structures (English)

1 reference

14 November 2017

3

1 reference

14 November 2017

5

Robert Preissner

0 references

Björn A Grüning

4

object named as

Bjoern Gruening

0 references

Kristian Rother

1

object named as

Kristian Rother

1 reference

14 November 2017

Peter Werner Hildebrand

2

1 reference

14 November 2017

Bjoern Gruening

4

1 reference

14 November 2017

language of work or name

English

0 references

publication date

23 October 2008

1 reference

14 November 2017

Nucleic Acids Research

1 reference

14 November 2017

37

1 reference

14 November 2017

Database issue

1 reference

14 November 2017

D393-5

1 reference

MetaMQAP: a meta-server for the quality assessment of protein models.

14 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

Hydrogen-bonding and packing features of membrane proteins: functional implications

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

Packing regularities in biological structures relate to their dynamics

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

CAVER: a new tool to explore routes from protein clefts, pockets and cavities

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

Structural basis for high-affinity volatile anesthetic binding in a natural 4-helix bundle protein

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

Molecular packing and packing defects in helical membrane proteins

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

Voro3D: 3D Voronoi tessellations applied to protein structures.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

CASTp: Computed Atlas of Surface Topography of proteins

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

The packing density in proteins: standard radii and volumes.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

Analytical shape computation of macromolecules: I. Molecular area and volume through alpha shape.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

Occluded molecular surface: analysis of protein packing.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

Intrinsic compressibility and volume compression in solvated proteins by molecular dynamics simulation at high pressure

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

The interpretation of protein structures: Total volume, group volume distributions and packing density

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

Different packing of external residues can explain differences in the thermostability of proteins from thermophilic and mesophilic organisms.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

Structure-based stability engineering of the mouse IgG1 Fab fragment by modifying constant domains.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

Protein flexibility acclimatizes photosynthetic energy conversion to the ambient temperature

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

Inhomogeneous molecular density: reference packing densities and distribution of cavities within proteins

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686436

Analysis of void volumes in proteins and application to stability of the p53 tumour suppressor protein

15 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18948293

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKN769

1 reference

journals/nar/RotherHGGP09

14 November 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

14 November 2017

PubMed publication ID

18948293

1 reference