(Q43145286)

English

Understanding the alpha-helix to coil transition in polypeptides using network rigidity: predicting heat and cold denaturation in mixed solvent conditions

scientific article published in September 2004

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

Understanding the alpha-helix to coil transition in polypeptides using network rigidity: predicting heat and cold denaturation in mixed solvent conditions (English)

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

author name string

Donald J Jacobs

1

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

Gregory G Wood

2

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

publication date

1 September 2004

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

75

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

1

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

1-31

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

Network rigidity at finite temperature: relationships between thermodynamic stability, the nonadditivity of entropy, and cooperativity in molecular systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Stereochemistry of polypeptide chain configurations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

The role of alpha-, 3(10)-, and pi-helix in helix-->coil transitions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Structure validation by Calpha geometry: phi,psi and Cbeta deviation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Recent advances in helix-coil theory.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Measuring dynamic flexibility of the coil state of a helix-forming peptide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Evidence of complete hydrophobic coating of bombesin by trifluoroethanol in aqueous solution: an NMR spectroscopic and molecular dynamics study.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Protein unfolding: rigidity lost

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Alpha-helical stabilization by side chain shielding of backbone hydrogen bonds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Crowding and hydration effects on protein conformation: a study with sol-gel encapsulated proteins.

1 reference

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25 May 2018

Ultracentrifuge and circular dichroism studies of folding equilibria in a retro GCN4-like leucine zipper

1 reference

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25 May 2018

High-resolution, high-pressure NMR studies of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Helix-coil transition theories. Are they correct?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Additivity principles in biochemistry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Elucidating the folding problem of helical peptides using empirical parameters. II. Helix macrodipole effects and rational modification of the helical content of natural peptides.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Modeling protein stability as heteropolymer collapse.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Pressure-induced dissociation and denaturation of allophycocyanin at subzero temperatures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Stability of protein structure and hydrophobic interaction.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Nucleation in protein folding--confusion of structure and process

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

Prediction of the thermodynamics of protein unfolding: the helix-coil transition of poly(L-alanine).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

The helix-coil transition in heterogeneous peptides with specific side-chain interactions: Theory and comparison with CD spectral data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

25 May 2018

A distance-controlled oligopeptide linker as a novel photo-induced energy transfer switch by secondary structural transition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

15 August 2018

Dipole interaction model predicted pi-pi* circular dichroism of cyclo(L-Pro)3 using structures created by semi-empirical, ab initio, and molecular mechanics methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

15 August 2018

Dual wavelength parametric test of two-state models for circular dichroism spectra of helical polypeptides: anomalous dichroic properties of alanine-rich peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

15 August 2018

Induction of helical structure in a heptapeptide with a metal cross-link: modification of the Lifson-Roig helix-coil theory to account for covalent cross-links

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

15 August 2018

Helix-coil transitions re-visited

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

15 August 2018

Protein flexibility predictions using graph theory

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

15 August 2018

Control of protein stability and reactions by weakly interacting cosolvents: the simplicity of the complicated

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

15 August 2018

Group additive contributions to the alcohol-induced alpha-helix formation of melittin: implication for the mechanism of the alcohol effects on proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4667961

15 August 2018

Combinatorial Rigidity

1 reference

https://api.crossref.org/works/10.1002%2FBIP.20102

21 January 2018

Molecular simulation of the effects of alcohols on peptide structure

1 reference

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3 November 2018

Decomposition of the Free Energy of a System in Terms of Specific Interactions

1 reference

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1 December 2018

Protein flexibility and dynamics using constraint theory

1 reference

https://pubmed.ncbi.nlm.nih.gov/15307195

12 December 2020

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Structure determination of a pseudotripeptide zinc complex with the COSMOS-NMR force field and DFT methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/15307195

12 December 2020

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The stability of hydrogen-bonded peptide structures in aqueous solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/15307195

12 December 2020

based on heuristic

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Identifying protein folding cores from the evolution of flexible regions during unfolding

1 reference

https://pubmed.ncbi.nlm.nih.gov/15307195

12 December 2020

based on heuristic

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Protein heat capacity: inconsistencies in the current view of cold denaturation

1 reference

https://pubmed.ncbi.nlm.nih.gov/15307195

12 December 2020

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Generic rigidity percolation: The pebble game

1 reference

https://pubmed.ncbi.nlm.nih.gov/15307195

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based on heuristic

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Stressed backbone and elasticity of random central-force systems

1 reference

https://pubmed.ncbi.nlm.nih.gov/15307195

12 December 2020

based on heuristic

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Thermodynamic analysis of a designed three-stranded coiled coil

1 reference

https://pubmed.ncbi.nlm.nih.gov/15307195

12 December 2020

based on heuristic

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A model for the interaction of trifluoroethanol with peptides and proteins

1 reference

https://pubmed.ncbi.nlm.nih.gov/15307195

12 December 2020

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Effect of cryosolvents and subzero temperatures on the hydrolysis of L-leucine-p-nitroanilide by porcine kidney leucine aminopeptidase

1 reference

https://pubmed.ncbi.nlm.nih.gov/15307195

12 December 2020

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Thermodynamics of protein denaturation. III. Denaturation of ribonuclease in water and in aqueous urea and aqueous ethanol mixtures

1 reference

https://pubmed.ncbi.nlm.nih.gov/15307195

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Denaturation and reactivity of invertase in frozen solutions

1 reference

https://pubmed.ncbi.nlm.nih.gov/15307195

12 December 2020

based on heuristic

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Identifiers

10.1002/BIP.20102

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 November 2017

ResearchGate publication ID

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