(Q43169792)

15 November 2017

Markov chain-based promoter structure modeling for tissue-specific expression pattern prediction (English)

1 reference

15 November 2017

0 references

Alexis Vandenbon

1

1 reference

15 November 2017

Yuki Miyamoto

2

1 reference

15 November 2017

Noriko Takimoto

3

1 reference

15 November 2017

Takehiro Kusakabe

4

1 reference

15 November 2017

Kenta Nakai

5

1 reference

15 November 2017

7 February 2008

1 reference

15 November 2017

1 reference

15 November 2017

15

1 reference

15 November 2017

1

1 reference

15 November 2017

3-11

1 reference

Identification of muscle-specific regulatory modules in Caenorhabditis elegans

15 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Muscle development in Ciona intestinalis requires the b-HLH myogenic regulatory factor gene Ci-MRF.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Origin of the vertebrate visual cycle: III. Distinct distribution of RPE65 and beta-carotene 15,15'-monooxygenase homologues in Ciona intestinalis

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

De novo discovery of a tissue-specific gene regulatory module in a chordate

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Ci-Tbx6b and Ci-Tbx6c are key mediators of the maternal effect gene Ci-macho1 in muscle cell differentiation in Ciona intestinalis embryos

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Identification of transcription factor binding sites with variable-order Bayesian networks

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Modulefinder: a tool for computational discovery of cis regulatory modules

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Computational discovery of DNA motifs associated with cell type-specific gene expression in Ciona

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

CisModule: de novo discovery of cis-regulatory modules by hierarchical mixture modeling

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Computational detection of cis -regulatory modules.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Cluster-Buster: Finding dense clusters of motifs in DNA sequences.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Additivity in protein-DNA interactions: how good an approximation is it?

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Nucleotides of transcription factor binding sites exert interdependent effects on the binding affinities of transcription factors

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Identification of regulatory regions which confer muscle-specific gene expression.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Microbial gene identification using interpolated Markov models

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Characterization of translational initiation sites in E. coli

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Position dependencies in transcription factor binding sites

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

CisView: a browser and database of cis-regulatory modules predicted in the mouse genome.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Dragon Promoter Mapper (DPM): a Bayesian framework for modelling promoter structures.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Predicting rules on organization of cis-regulatory elements, taking the order of elements into account

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Modeling within-motif dependence for transcription factor binding site predictions

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Searching for statistically significant regulatory modules.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

A probabilistic method to detect regulatory modules.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650632

Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognition

15 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18258700

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An algorithm for finding signals of unknown length in DNA sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18258700

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A cDNA resource from the basal chordateCiona intestinalis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18258700

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/DNARES/DSM034

1 reference

15 November 2017

1 reference

15 November 2017

PubMed publication ID

18258700

1 reference