(Q33265120)

English

Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves

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scholarly article

1 reference

Europe PubMed Central

24 July 2017

Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves (English)

1 reference

Europe PubMed Central

24 July 2017

1 reference

based on heuristic

inferred from title

Kenneth W. Berendzen

object named as

Kenneth W Berendzen

1

0 references

author name string

Kurt Stüber

2

1 reference

Europe PubMed Central

24 July 2017

Klaus Harter

3

1 reference

Europe PubMed Central

24 July 2017

Dierk Wanke

4

1 reference

Europe PubMed Central

24 July 2017

publication date

30 November 2006

1 reference

Europe PubMed Central

24 July 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

24 July 2017

7

1 reference

Europe PubMed Central

24 July 2017

522

1 reference

Europe PubMed Central

24 July 2017

https://scigraph.springernature.com/pub.10.1186/1471-2105-7-522

0 references

The transcriptional landscape of the mammalian genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

Identification of cis-elements that regulate gene expression during initiation of axillary bud outgrowth in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

Mapping of transcription start sites in Saccharomyces cerevisiae using 5' SAGE

1 reference

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21 June 2018

Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana

1 reference

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21 June 2018

Computational technique for improvement of the position-weight matrices for the DNA/protein binding sites

1 reference

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21 June 2018

Identification of transcription factor binding sites with variable-order Bayesian networks

1 reference

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21 June 2018

Genome wide analysis of Arabidopsis core promoters

1 reference

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21 June 2018

Plant promoter prediction with confidence estimation

1 reference

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1 reference

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1 reference

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21 June 2018

Synergy of human Pol II core promoter elements revealed by statistical sequence analysis

1 reference

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21 June 2018

Comparison of ABF1 and RAP1 in chromatin opening and transactivator potentiation in the budding yeast Saccharomyces cerevisiae

1 reference

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21 June 2018

Tbx2 represses expression of Connexin43 in osteoblastic-like cells.

1 reference

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21 June 2018

Clustering of DNA sequences in human promoters

1 reference

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21 June 2018

The MTE, a new core promoter element for transcription by RNA polymerase II.

1 reference

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21 June 2018

Anything else but GAGA: a nonhistone protein complex reshapes chromatin structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

Identification of promoter motifs involved in the network of phytochrome A-regulated gene expression by combined analysis of genomic sequence and microarray data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

Combining phylogenetic data with co-regulated genes to identify regulatory motifs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

Computational analysis of core promoters in the Drosophila genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

TRANSFAC: transcriptional regulation, from patterns to profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

PlantProm: a database of plant promoter sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

The DPE, a core promoter element for transcription by RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

Functional diversity of silencers in budding yeasts

1 reference

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21 June 2018

A global analysis of Caenorhabditis elegans operons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

Computational detection and location of transcription start sites in mammalian genomic DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

Structure-function studies of ETS transcription factors.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

Auxin transport promotes Arabidopsis lateral root initiation

1 reference

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The transcriptome of Arabidopsis thaliana during systemic acquired resistance.

1 reference

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21 June 2018

The downstream promoter element DPE appears to be as widely used as the TATA box in Drosophila core promoters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

21 June 2018

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

1 reference

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21 June 2018

Different roles for abf1p and a T-rich promoter element in nucleosome organization of the yeast RPS28A gene

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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Promoter elements in Drosophila melanogaster revealed by sequence analysis.

1 reference

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21 June 2018

Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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31 October 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

31 October 2018

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1 reference

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31 October 2018

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1 reference

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PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1698937

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1 reference

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Aux/IAA proteins repress expression of reporter genes containing natural and highly active synthetic auxin response elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/17137509

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based on heuristic

inferred from PubMed ID database lookup

TRES: comparative promoter sequence analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/17137509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifying functional elements by comparative DNA sequence analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/17137509

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/17137509

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inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/17137509

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2105-7-522

1 reference

Europe PubMed Central

24 July 2017

DBLP publication ID

journals/bmcbi/BerendzenSHW06

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

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1 reference

Europe PubMed Central

24 July 2017

1 reference

Europe PubMed Central

24 July 2017

ResearchGate publication ID

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