(Q43176529)

15 November 2017

On the assumptions underlying milestoning (English)

1 reference

15 November 2017

1

Eric Vanden-Eijnden

1 reference

15 November 2017

Maddalena Venturoli

2

1 reference

15 November 2017

Giovanni Ciccotti

series ordinal

3

1 reference

15 November 2017

Ron Elber

series ordinal

4

1 reference

15 November 2017

language of work or name

English

0 references

publication date

1 November 2008

1 reference

Journal of Chemical Physics

15 November 2017

1 reference

15 November 2017

129

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15 November 2017

17

1 reference

15 November 2017

174102

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A milestoning study of the kinetics of an allosteric transition: atomically detailed simulations of deoxy Scapharca hemoglobin

15 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Revisiting the finite temperature string method for the calculation of reaction tubes and free energies.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Markovian milestoning with Voronoi tessellations

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Coarse master equations for peptide folding dynamics.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Hierarchical analysis of conformational dynamics in biomolecules: transition networks of metastable states.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Extending molecular dynamics time scales with milestoning: example of complex kinetics in a solvated peptide.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Illustration of transition path theory on a collection of simple examples.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Obtaining reaction coordinates by likelihood maximization.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Automatic method for identifying reaction coordinates in complex systems.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Finite temperature string method for the study of rare events.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

String method in collective variables: minimum free energy paths and isocommittor surfaces.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Efficient computation of the first passage time distribution of the generalized master equation by steady-state relaxation.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Simulating rare events in equilibrium or nonequilibrium stochastic systems.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Transition pathways in complex systems: Application of the finite-temperature string method to the alanine dipeptide

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Rate constants for diffusive processes by partial path sampling.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

Computing time scales from reaction coordinates by milestoning.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2646510

String method for the study of rare events

15 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1063%2F1.2996509

Coarse molecular dynamics of a peptide fragment: Free energy, kinetics, and long-time dynamics computations

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1063%2F1.2996509

21 January 2018

Identifiers

DOI

10.1063/1.2996509

1 reference

15 November 2017

1 reference

15 November 2017

PubMed publication ID

19045328

1 reference