(Q43203265)

English

A molecular dynamics study of the formation, stability, and oligomerization state of two designed coiled coils: possibilities and limitations

scientific article published on 8 September 2005

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

A molecular dynamics study of the formation, stability, and oligomerization state of two designed coiled coils: possibilities and limitations (English)

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

molecular design

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4

object named as

Beate Koksch

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

author name string

Angel Piñeiro

1

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

Alessandra Villa

2

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

Toni Vagt

3

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

Alan E Mark

5

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

language of work or name

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publication date

8 September 2005

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Europe PubMed Central

PMC publication ID

16 November 2017

Biophysical Journal

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Europe PubMed Central

PMC publication ID

16 November 2017

89

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

6

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

3701-3713

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

Coiled coil domains: stability, specificity, and biological implications

1 reference

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25 May 2018

Historical review: another 50th anniversary--new periodicities in coiled coils

1 reference

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25 May 2018

Molecular dynamics simulations of the E1/E2 transmembrane domain of the Semliki Forest virus

1 reference

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Pores formed by the nicotinic receptor m2delta Peptide: a molecular dynamics simulation study

1 reference

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25 May 2018

A procedure for refining a coiled coil protein structure using x-ray fiber diffraction and modeling.

1 reference

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25 May 2018

Sequence determinants of the energetics of folding of a transmembrane four-helix-bundle protein.

1 reference

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25 May 2018

The design of antiparallel coiled coils

1 reference

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25 May 2018

Open-and-shut cases in coiled-coil assembly: alpha-sheets and alpha-cylinders

1 reference

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25 May 2018

Designed heterodimerizing leucine zippers with a ranger of pIs and stabilities up to 10(-15) M

1 reference

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25 May 2018

Effects of charged amino acids at b and c heptad positions on specificity and stability of four-chain coiled coils

1 reference

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25 May 2018

Socket: a program for identifying and analysing coiled-coil motifs within protein structures.

1 reference

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25 May 2018

An engineered leucine zipper a position mutant with an unusual three-state unfolding pathway

1 reference

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25 May 2018

De novo simulations of the folding thermodynamics of the GCN4 leucine zipper.

1 reference

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An alamethicin channel in a lipid bilayer: molecular dynamics simulations

1 reference

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25 May 2018

Predicting coiled-coil regions in proteins

1 reference

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25 May 2018

MultiCoil: a program for predicting two- and three-stranded coiled coils

1 reference

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The crystal structure of the designed trimeric coiled coil coil-VaLd: implications for engineering crystals and supramolecular assemblies

1 reference

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25 May 2018

Coiled coils: new structures and new functions

1 reference

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25 May 2018

Thermodynamic characterization of the coupled folding and association of heterodimeric coiled coils (leucine zippers).

1 reference

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25 May 2018

Predicting leucine zipper structures from sequence

1 reference

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25 May 2018

VMD: visual molecular dynamics

1 reference

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High resolution NMR solution structure of the leucine zipper domain of the c-Jun homodimer

1 reference

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25 May 2018

Predicting oligomerization states of coiled coils

1 reference

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25 May 2018

Crystal structure of a synthetic triple-stranded alpha-helical bundle

1 reference

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25 May 2018

Kinetics of folding of leucine zipper domains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366940

25 May 2018

Predicting coiled coils by use of pairwise residue correlations

1 reference

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RASMOL: biomolecular graphics for all

1 reference

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The role of the alpha-helix dipole in protein function and structure

1 reference

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The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins

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WHAT IF: a molecular modeling and drug design program

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Predicting coiled coils from protein sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366940

25 May 2018

X-ray scattering indicates that the leucine zipper is a coiled coil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366940

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The alpha-helix dipole and the properties of proteins

1 reference

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Design of a functional protein for molecular recognition: specificity of ligand binding in a metal-assembled protein cavity probed by 19f NMR.

1 reference

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Extended knobs-into-holes packing in classical and complex coiled-coil assemblies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1366940

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Specific control of peptide assembly with combined hydrophilic and hydrophobic interfaces

1 reference

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Unfolding of a leucine zipper is not a simple two-state transition

1 reference

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1 reference

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SNARE the rod, coil the complex

1 reference

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1 reference

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1 reference

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based on heuristic

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Investigation of electrostatic interactions in two-stranded coiled-coils through residue shuffling

1 reference

https://pubmed.ncbi.nlm.nih.gov/16150975

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/16150975

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based on heuristic

inferred from PubMed ID database lookup

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1 reference

https://pubmed.ncbi.nlm.nih.gov/16150975

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based on heuristic

inferred from PubMed ID database lookup

An isoleucine zipper peptide forms a native-like triple stranded coiled coil in solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/16150975

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based on heuristic

inferred from PubMed ID database lookup

Restraint-driven formation of alpha-helical coiled coils in molecular dynamics simulations

1 reference

https://pubmed.ncbi.nlm.nih.gov/16150975

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based on heuristic

inferred from PubMed ID database lookup

Structure prediction of the dimeric neu/ErbB-2 transmembrane domain from multi-nanosecond molecular dynamics simulations

1 reference

https://pubmed.ncbi.nlm.nih.gov/16150975

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based on heuristic

inferred from PubMed ID database lookup

Design of two-stranded and three-stranded coiled-coil peptides

1 reference

https://pubmed.ncbi.nlm.nih.gov/16150975

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1529/BIOPHYSJ.104.055590

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 November 2017

ResearchGate publication ID

0 references

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