(Q43513828)

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Mass spectrum sequential subtraction speeds up searching large peptide MS/MS spectra datasets against large nucleotide databases for proteogenomics.

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22686349%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

Mass spectrum sequential subtraction speeds up searching large peptide MS/MS spectra datasets against large nucleotide databases for proteogenomics (English)

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22686349%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

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Naoyuki Sugiyama

2

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Europe PubMed Central

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4 February 2020

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Mohamed Helmy

1

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4 February 2020

Masaru Tomita

3

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4 February 2020

Yasushi Ishihama

4

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4 February 2020

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12 June 2012

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4 February 2020

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4 February 2020

17

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4 February 2020

8

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4 February 2020

633-644

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4 February 2020

Computational gene prediction using multiple sources of evidence

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Basic local alignment search tool

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Discovery and revision of Arabidopsis genes by proteogenomics

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Matching peptide mass spectra to EST and genomic DNA databases

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nGASP--the nematode genome annotation assessment project

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21 January 2018

TANDEM: matching proteins with tandem mass spectra

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https://api.crossref.org/works/10.1111%2FJ.1365-2443.2012.01615.X

21 January 2018

Novel peptide identification from tandem mass spectra using ESTs and sequence database compression

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21 January 2018

Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics

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21 January 2018

Exploiting the kernel trick to correlate fragment ions for peptide identification via tandem mass spectrometry

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https://api.crossref.org/works/10.1111%2FJ.1365-2443.2012.01615.X

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OryzaPG-DB: rice proteome database based on shotgun proteogenomics

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Biomarker candidate identification in Yersinia pestis using organism-wide semiquantitative proteomics

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21 January 2018

The map-based sequence of the rice genome

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2443.2012.01615.X

21 January 2018

Overview of tandem mass spectrometry (MS/MS) database search algorithms

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2443.2012.01615.X

21 January 2018

PRISM: a data management system for high-throughput proteomics

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2443.2012.01615.X

21 January 2018

Proteomic detection of non-annotated protein-coding genes in Pseudomonas fluorescens Pf0-1.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2443.2012.01615.X

21 January 2018

pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2443.2012.01615.X

21 January 2018

Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing.

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2443.2012.01615.X

21 January 2018

Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2443.2012.01615.X

21 January 2018

A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data

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Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants.

1 reference

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Large-scale prokaryotic gene prediction and comparison to genome annotation

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Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets

1 reference

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21 January 2018

The TIGR Rice Genome Annotation Resource: improvements and new features

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https://api.crossref.org/works/10.1111%2FJ.1365-2443.2012.01615.X

21 January 2018

Rapid and accurate peptide identification from tandem mass spectra

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2443.2012.01615.X

21 January 2018

Probability-based protein identification by searching sequence databases using mass spectrometry data

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2443.2012.01615.X

21 January 2018

High-throughput proteomics detection of novel splice isoforms in human platelets

1 reference

https://api.crossref.org/works/10.1111%2FJ.1365-2443.2012.01615.X

21 January 2018

PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra

1 reference

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The proteogenomic mapping tool

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Whole genome searching with shotgun proteomic data: applications for genome annotation

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Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

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An empirical strategy for characterizing bacterial proteomes across species in the absence of genomic sequences.

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pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry

1 reference

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Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger

1 reference

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Identifiers

10.1111/J.1365-2443.2012.01615.X

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22686349%20AND%20SRC:MED&resulttype=core&format=json

4 February 2020

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4 February 2020

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