(Q51718280)

10 April 2018

title

Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing. (English)

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You Li

1

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10 April 2018

Hao Chi

2

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Le-Heng Wang

3

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Hai-Peng Wang

4

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Yan Fu

5

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Zuo-Fei Yuan

6

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Su-Jun Li

7

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Yan-Sheng Liu

8

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Rui-Xiang Sun

9

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10 April 2018

Rong Zeng

10

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Si-Min He

11

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10 April 2018

publication date

1 March 2010

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10 April 2018

Rapid Communications in Mass Spectrometry

published in

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10 April 2018

volume

24

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issue

6

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page(s)

807-814

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Probability-based protein identification by searching sequence databases using mass spectrometry data

cites work

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 January 2018

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Exploiting the kernel trick to correlate fragment ions for peptide identification via tandem mass spectrometry

21 January 2018

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Manipulating the fragmentation patterns of phosphopeptides via gas-phase boron derivatization: determining phosphorylation sites in peptides with multiple serines

21 January 2018

1 reference

A method to determine the ionization efficiency change of peptides caused by phosphorylation

21 January 2018

1 reference

TANDEM: matching proteins with tandem mass spectra

21 January 2018

1 reference

Open mass spectrometry search algorithm

21 January 2018

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OLAV: towards high-throughput tandem mass spectrometry data identification

21 January 2018

1 reference

Error-tolerant identification of peptides in sequence databases by peptide sequence tags

21 January 2018

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GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model

21 January 2018

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MultiTag: multiple error-tolerant sequence tag search for the sequence-similarity identification of proteins by mass spectrometry

21 January 2018

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InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

21 January 2018

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Spectrum fusion: using multiple mass spectra for de novo Peptide sequencing

21 January 2018

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The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra.

21 January 2018

1 reference

Improving sensitivity in shotgun proteomics using a peptide-centric database with reduced complexity: protease cleavage and SCX elution rules from data mining of MS/MS spectra

21 January 2018

1 reference

Speeding up tandem mass spectrometry database search: metric embeddings and fast near neighbor search

21 January 2018

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PepSplice: cache-efficient search algorithms for comprehensive identification of tandem mass spectra

21 January 2018

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Rapid and accurate peptide identification from tandem mass spectra

21 January 2018

1 reference

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

21 January 2018

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A suboptimal algorithm for de novo peptide sequencing via tandem mass spectrometry

21 January 2018

1 reference

Efficient string matching: an aid to bibliographic search

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/RCM.4448

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10 April 2018

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10 April 2018