(Q43604828)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11349126%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

title

Contacts between the 5' nuclease of DNA polymerase I and its DNA substrate (English)

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7 November 2019

3

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7 November 2019

author name string

Y Xu

1

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7 November 2019

O Potapova

2

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7 November 2019

N D Grindley

4

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7 November 2019

C M Joyce

5

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7 November 2019

language of work or name

English

0 references

publication date

10 May 2001

1 reference

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Journal of Biological Chemistry

7 November 2019

published in

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7 November 2019

volume

276

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7 November 2019

page(s)

30167-30177

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7 November 2019

issue

32

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Conserved sites in the 5'-3' exonuclease domain of Escherichia coli DNA polymerase

7 November 2019

cites work

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Biochemical and mutational studies of the 5'-3' exonuclease of DNA polymerase I of Escherichia coli

21 January 2018

1 reference

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The FEN-1 family of structure-specific nucleases in eukaryotic DNA replication, recombination and repair

21 January 2018

1 reference

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Structure of bacteriophage T4 RNase H, a 5' to 3' RNA-DNA and DNA-DNA exonuclease with sequence similarity to the RAD2 family of eukaryotic proteins

21 January 2018

1 reference

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Functional domains within FEN-1 and RAD2 define a family of structure-specific endonucleases: implications for nucleotide excision repair

21 January 2018

1 reference

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Involvement of flap endonuclease 1 in base excision DNA repair.

21 January 2018

1 reference

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The 5'-exonuclease activity of bacteriophage T4 RNase H is stimulated by the T4 gene 32 single-stranded DNA-binding protein, but its flap endonuclease is inhibited

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Calf RTH-1 nuclease can remove the initiator RNAs of Okazaki fragments by endonuclease activity

21 January 2018

1 reference

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Comparison of the 5' nuclease activities of taq DNA polymerase and its isolated nuclease domain

21 January 2018

1 reference

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Coordination between the polymerase and 5'-nuclease components of DNA polymerase I of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Flap endonuclease homologs in archaebacteria exist as independent proteins.

21 January 2018

1 reference

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Function and structure relationships in DNA polymerases

21 January 2018

1 reference

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Deoxy- and dideoxynucleotide discrimination and identification of critical 5' nuclease domain residues of the DNA polymerase I from Mycobacterium tuberculosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Essential amino acids for substrate binding and catalysis of human flap endonuclease 1

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Functional analysis of point mutations in human flap endonuclease-1 active site

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Crystal structure of Thermus aquaticus DNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

A helical arch allowing single-stranded DNA to thread through T5 5'-exonuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

The crystal structure of flap endonuclease-1 from Methanococcus jannaschii

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Structure of the DNA repair and replication endonuclease and exonuclease FEN-1: coupling DNA and PCNA binding to FEN-1 activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Flexible loops and helical arches.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Calf 5' to 3' exo/endonuclease must slide from a 5' end of the substrate to perform structure-specific cleavage

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Effect of flap modifications on human FEN1 cleavage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Absorbance melting curves of RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Quantitative motion analysis and visualization of cellular structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Deoxynucleoside triphosphate and pyrophosphate binding sites in the catalytically competent ternary complex for the polymerase reaction catalyzed by DNA polymerase I (Klenow fragment).

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

18 DNA contacts probed by modification protection and interference studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

A new method for sequencing DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Exonuclease IX of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Characterization of the 5' to 3' exonuclease associated with Thermus aquaticus DNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Processing of branched DNA intermediates by a complex of human FEN-1 and PCNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Mutagenesis of conserved lysine residues in bacteriophage T5 5'-3' exonuclease suggests separate mechanisms of endo-and exonucleolytic cleavage

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

A single cleavage assay for T5 5'-->3' exonuclease: determination of the catalytic parameters forwild-type and mutant proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Construction of single amino acid substitution mutants of cloned Bacillus stearothermophilus DNA polymerase I which lack 5'-->3' exonuclease activity.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Hydrogen bonding and biological specificity analysed by protein engineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Enzymatic completion of mammalian lagging-strand DNA replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

The 3′-tail of a forked-duplex sterically determines whether one or two DNA strands pass through the central channel of a replication-fork helicase 1 1Edited by M. Gottesman

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M100985200

21 January 2018

Identifiers

DOI

10.1074/JBC.M100985200

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11349126%20AND%20SRC:MED&resulttype=core&format=json

7 November 2019

1 reference