(Q43740877)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19287049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

title

Flux balance analysis of biological systems: applications and challenges (English)

1 reference

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23 January 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19287049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

Nagasuma Chandra

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19287049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

2

Nagasuma Chandra

1 reference

26 November 2017

publication date

15 March 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19287049%20AND%20SRC:MED&resulttype=core&format=json

Briefings in Bioinformatics

23 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19287049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

volume

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19287049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

issue

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19287049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

page(s)

435-449

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19287049%20AND%20SRC:MED&resulttype=core&format=json

Mathematical models in microbial systems biology

23 January 2020

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Towards multidimensional genome annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Genome-scale models of microbial cells: evaluating the consequences of constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Reconstruction of biochemical networks in microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Metabolic modeling of microbial strains in silico.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Engineering metabolism and product formation in Corynebacterium glutamicum by coordinated gene overexpression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Flux balance analysis of mycolic acid pathway: targets for anti-tubercular drugs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Integrating high-throughput and computational data elucidates bacterial networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Advances in flux balance analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Analysis of optimality in natural and perturbed metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Optimization-based framework for inferring and testing hypothesized metabolic objective functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Reconstruction and functional characterization of the human mitochondrial metabolic network based on proteomic and biochemical data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Robustness analysis of the Escherichia coli metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

The genome-scale metabolic extreme pathway structure in Haemophilus influenzae shows significant network redundancy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

From Annotated Genomes to Metabolic Flux Models and Kinetic Parameter Fitting

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Regulatory on/off minimization of metabolic flux changes after genetic perturbations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Plasticity of genetic interactions in metabolic networks of yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Transcriptional regulation in constraints-based metabolic models of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosis metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Regulation of gene expression in flux balance models of metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Constraints-based models: regulation of gene expression reduces the steady-state solution space

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Including metabolite concentrations into flux balance analysis: thermodynamic realizability as a constraint on flux distributions in metabolic networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Exploring the overproduction of amino acids using the bilevel optimization framework OptKnock

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Integrated energy and flux balance based multiobjective framework for large-scale metabolic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Global reconstruction of the human metabolic network based on genomic and bibliomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Large-scale evaluation of in silico gene deletions in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ661 and proposing alternative drug targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Detection of elementary flux modes in biochemical networks: a promising tool for pathway analysis and metabolic engineering.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Theory for the systemic definition of metabolic pathways and their use in interpreting metabolic function from a pathway-oriented perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Comparison of network-based pathway analysis methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Flux coupling analysis of genome-scale metabolic network reconstructions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Predicting gene essentiality using genome-scale in silico models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

targetTB: a target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Hallmarks of mycolic acid biosynthesis: a comparative genomics study.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Antimycobacterial Activity and Mechanism of Action of NAS-91

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Genome-scale reconstruction and analysis of the Pseudomonas putida KT2440 metabolic network facilitates applications in biotechnology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Strain improvement by metabolic engineering: lysine production as a case study for systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Systems approach to refining genome annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Metabolic reconstruction and analysis for parasite genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Predicting biological system objectives de novo from internal state measurements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Bayesian-based selection of metabolic objective functions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Flux balance analysis in the era of metabolomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

High-throughput phenomics: experimental methods for mapping fluxomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Large-scale 13C-flux analysis reveals mechanistic principles of metabolic network robustness to null mutations in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Incorporating metabolic flux ratios into constraint-based flux analysis by using artificial metabolites and converging ratio determinants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Dynamic analysis of integrated signaling, metabolic, and regulatory networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Analysis of global control of Escherichia coli carbohydrate uptake

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenotyping and gene essentiality data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Systems properties of the Haemophilus influenzae Rd metabolic genotype

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Assessment of the metabolic capabilities of Haemophilus influenzae Rd through a genome-scale pathway analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Genome-scale metabolic model of Helicobacter pylori 26695.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIB%2FBBP011

21 January 2018

Identifiers

DOI

10.1093/BIB/BBP011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19287049%20AND%20SRC:MED&resulttype=core&format=json

23 January 2020

DBLP publication ID

journals/bib/RamanC09

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference