(Q43750075)

26 November 2017

title

Comparing clustering and pre-processing in taxonomy analysis (English)

1 reference

26 November 2017

2

1 reference

26 November 2017

Marc J Bonder

1

0 references

author name string

Egija Zaura

series ordinal

3

1 reference

26 November 2017

Bernd W Brandt

series ordinal

4

1 reference

26 November 2017

language of work or name

English

0 references

publication date

8 September 2012

1 reference

26 November 2017

number of pages

7

1 reference

based on heuristic

inferred from page(s)

published in

Bioinformatics

1 reference

26 November 2017

volume

28

1 reference

26 November 2017

issue

22

1 reference

26 November 2017

page(s)

2891-2897

1 reference

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

26 November 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

TaxMan: a server to trim rRNA reference databases and inspect taxonomic coverage

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

QIIME allows analysis of high-throughput community sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

The human oral microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Search and clustering orders of magnitude faster than BLAST

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

UCHIME improves sensitivity and speed of chimera detection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Two-stage clustering (TSC): a pipeline for selecting operational taxonomic units for the high-throughput sequencing of PCR amplicons

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Pyrosequencing analysis of the oral microflora of healthy adults

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

The relation between oral Candida load and bacterial microbiome profiles in Dutch older adults

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Ecology of the microbiome of the infected root canal system: a comparison between apical and coronal root segments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Bacterial diversity in human subgingival plaque

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Removing noise from pyrosequenced amplicons

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Next-generation sequencing transforms today's biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Secondary structure information does not improve OTU assignment for partial 16s rRNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

Saliva microbiomes distinguish caries-active from healthy human populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS552

10.1093/BIOINFORMATICS/BTS552

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/BonderAZB12

26 November 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference