(Q43806620)

27 November 2017

title

Changes in substrate availability in Escherichia coli lead to rapid metabolite, flux and growth rate responses (English)

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27 November 2017

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Hilal Taymaz-Nikerel

1

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27 November 2017

Marjan De Mey

2

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27 November 2017

Gino Baart

3

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27 November 2017

Jo Maertens

4

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27 November 2017

Joseph J Heijnen

5

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27 November 2017

Walter van Gulik

6

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27 November 2017

publication date

29 January 2013

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27 November 2017

published in

Metabolic Engineering

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27 November 2017

volume

16

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27 November 2017

page(s)

115-129

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Rapid changes in gene expression dynamics in response to superoxide reveal SoxRS-dependent and independent transcriptional networks

27 November 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

An in vivo data-driven framework for classification and quantification of enzyme kinetics and determination of apparent thermodynamic data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Fundamental Escherichia coli biochemical pathways for biomass and energy production: creation of overall flux states

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Dynamic modeling of the central carbon metabolism of Escherichia coli.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Catching prompt metabolite dynamics in Escherichia coli with the BioScope at oxygen rich conditions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Transcription profiling of the stringent response in Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Combining genomics, metabolome analysis, and biochemical modelling to understand metabolic networks

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

A novel metabolic cycle catalyzes glucose oxidation and anaplerosis in hungry Escherichia coli.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Succinate uptake and related proton movements in Escherichia coli K12

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Prediction of kinetic parameters from DNA-binding site sequences for modeling global transcription dynamics in Escherichia coli

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Systems biology of microbial metabolism

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Multiple high-throughput analyses monitor the response of E. coli to perturbations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

EcoCyc: a comprehensive view of Escherichia coli biology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Data integration and analysis of biological networks

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

In vivo assay of protein synthesizing capacity of Escherichia coli from slowly growing chemostat cultures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Characterization of the specific pyruvate transport system in Escherichia coli K-12.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Modelling and analysis of metabolic pathways

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Changes in the metabolome of Saccharomyces cerevisiae associated with evolution in aerobic glucose-limited chemostats

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Measurement of Unsteady State Growth Rates of Micro-Organisms

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

7 January 2021

Metabolic engineering

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Regulation of Bacterial Growth

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Model reduction and a priori kinetic parameter identifiability analysis using metabolome time series for metabolic reaction networks with linlog kinetics.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Applying metabolic profiling techniques for stimulus-response experiments: chances and pitfalls.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Escherichia coli transcriptome dynamics during the transition from anaerobic to aerobic conditions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Automated sampling device for monitoring intracellular metabolite dynamics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

In vivo dynamics of glycolysis in Escherichia coli shows need for growth-rate dependent metabolome analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

7 January 2021

Metabolic engineering

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Comparison of the transient responses of Escherichia coli to a glucose pulse of various intensities.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Genome-derived minimal metabolic models for Escherichia coli MG1655 with estimated in vivo respiratory ATP stoichiometry

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Development and application of a differential method for reliable metabolome analysis in Escherichia coli.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Escherichia coli responds with a rapid and large change in growth rate upon a shift from glucose-limited to glucose-excess conditions.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae : I. Experimental observations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Reprogramming of Escherichia coli K-12 metabolism during the initial phase of transition from an anaerobic to a micro-aerobic environment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Rapid sampling for analysis of in vivo kinetics using the BioScope: a system for continuous-pulse experiments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Quantitative analysis of the microbial metabolome by isotope dilution mass spectrometry using uniformly 13C-labeled cell extracts as internal standards

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Short-term metabolome dynamics and carbon, electron, and ATP balances in chemostat-grown Saccharomyces cerevisiae CEN.PK 113-7D following a glucose pulse

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Regulation of ribosome synthesis in Escherichia coli: effects of temperature and dilution rate changes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

Macromolecular Composition During Steady-State Growth of Escherichia coli B/r

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMBEN.2013.01.004

inferred from DOI database lookup

7 January 2021

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Identifiers

DOI

10.1016/J.YMBEN.2013.01.004

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27 November 2017

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