(Q44008372)

English

The genome of an intranuclear parasite, Paramicrosporidium saccamoebae, reveals alternative adaptations to obligate intracellular parasitism

scientific article published on 24 November 2017

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scholarly article

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Europe PubMed Central

PMC publication ID

8 January 2018

http://europepmc.org/abstract/PMC/5701793

The genome of an intranuclear parasite, Paramicrosporidium saccamoebae, reveals alternative adaptations to obligate intracellular parasitism (English)

1 reference

Europe PubMed Central

PMC publication ID

8 January 2018

http://europepmc.org/abstract/PMC/5701793

C Alisha Quandt

1

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29171834%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Daniele Corsaro

3

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29171834%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Nicolas Corradi

6

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Europe PubMed Central

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10 June 2020

Timothy Y James

7

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29171834%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Julia Walochnik

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Julia Walochnik

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10 June 2020

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Rolf Michel

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Europe PubMed Central

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10 June 2020

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Denis Beaudet

2

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Europe PubMed Central

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10 June 2020

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24 November 2017

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Europe PubMed Central

PMC publication ID

8 January 2018

http://europepmc.org/abstract/PMC/5701793

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29171834%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

6

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29171834%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

Microsporidia: Obligate Intracellular Pathogens Within the Fungal Kingdom

1 reference

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25 May 2018

What Defines the "Kingdom" Fungi?

1 reference

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25 May 2018

Early Diverging Fungi: Diversity and Impact at the Dawn of Terrestrial Life

1 reference

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Mitochondrial Genome Evolution and a Novel RNA Editing System in Deep-Branching Heteroloboseids

1 reference

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25 May 2018

Microsporidia: Why Make Nucleotides if You Can Steal Them?

1 reference

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25 May 2018

Genome Analysis of Pseudoloma neurophilia: A Microsporidian Parasite of Zebrafish (Danio rerio).

1 reference

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25 May 2018

Molecular identification of Nucleophaga terricolae sp. nov. (Rozellomycota), and new insights on the origin of the Microsporidia

1 reference

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25 May 2018

Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides

1 reference

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25 May 2018

The genome of an Encephalitozoon cuniculi type III strain reveals insights into the genetic diversity and mode of reproduction of a ubiquitous vertebrate pathogen

1 reference

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25 May 2018

Microsporidia: Eukaryotic Intracellular Parasites Shaped by Gene Loss and Horizontal Gene Transfers

1 reference

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25 May 2018

Novel basal, fungal lineages from freshwater phytoplankton and lake samples.

1 reference

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25 May 2018

Evolution of a morphological novelty occurred before genome compaction in a lineage of extreme parasites.

1 reference

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25 May 2018

BEDTools: The Swiss-Army Tool for Genome Feature Analysis.

1 reference

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25 May 2018

Morphology, phylogeny, and ecology of the aphelids (Aphelidea, Opisthokonta) and proposal for the new superphylum Opisthosporidia

1 reference

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25 May 2018

Microsporidia-like parasites of amoebae belong to the early fungal lineage Rozellomycota.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

High variability of mitochondrial gene order among fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

1 reference

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25 May 2018

Strategies for maximizing ATP supply in the microsporidian Encephalitozoon cuniculi: direct binding of mitochondria to the parasitophorous vacuole and clustering of the mitochondrial porin VDAC.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

PATRIC, the bacterial bioinformatics database and analysis resource

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

Data, information, knowledge and principle: back to metabolism in KEGG

1 reference

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De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

Microsatellite and single-nucleotide polymorphisms indicate recurrent transitions to asexuality in a microsporidian parasite.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

Nucleospora cyclopteri n. sp., an intranuclear microsporidian infecting wild lumpfish, Cyclopterus lumpus L., in Icelandic waters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

Extremely reduced levels of heterozygosity in the vertebrate pathogen Encephalitozoon cuniculi.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

Single-nucleotide polymorphisms of two closely related microsporidian parasites suggest a clonal population expansion after the last glaciation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

Early evolution of eukaryote feeding modes, cell structural diversity, and classification of the protozoan phyla Loukozoa, Sulcozoa, and Choanozoa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

Phylogenomics supports microsporidia as the earliest diverging clade of sequenced fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

Fast gapped-read alignment with Bowtie 2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

Accelerated Profile HMM Searches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

Conserved meiotic machinery in Glomus spp., a putatively ancient asexual fungal lineage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

Discovery of novel intermediate forms redefines the fungal tree of life

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

Five questions about microsporidia

1 reference

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Community-wide analysis of microbial genome sequence signatures

1 reference

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25 May 2018

The environmental clade LKM11 and Rozella form the deepest branching clade of fungi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

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Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

A novel route for ATP acquisition by the remnant mitochondria of Encephalitozoon cuniculi.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

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MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

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1 reference

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KAAS: an automatic genome annotation and pathway reconstruction server

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

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Microsporidian mitosomes retain elements of the general mitochondrial targeting system

1 reference

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AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

De novo identification of repeat families in large genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

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APE: Analyses of Phylogenetics and Evolution in R language

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

25 May 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5701793

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1 reference

https://api.crossref.org/works/10.7554%2FELIFE.29594

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1 reference

https://api.crossref.org/works/10.7554%2FELIFE.29594

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Molecular characterization of vulnibactin biosynthesis in Vibrio vulnificus indicates the existence of an alternative siderophore

1 reference

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Identifiers

10.7554/ELIFE.29594

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29171834%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29171834%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29171834%20AND%20SRC:MED&resulttype=core&format=json

10 June 2020

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