(Q44019149)

English

Effects of substitutions in a conserved DX(2)GR sequence motif, found in many DNA-dependent nucleotide polymerases, on transcription by T7 RNA polymerase

scientific article published in May 2002

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scholarly article

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Europe PubMed Central

PubMed publication ID

29 November 2017

Effects of substitutions in a conserved DX(2)GR sequence motif, found in many DNA-dependent nucleotide polymerases, on transcription by T7 RNA polymerase (English)

1 reference

Europe PubMed Central

PubMed publication ID

29 November 2017

author name string

Diane Imburgio

1

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Europe PubMed Central

PubMed publication ID

29 November 2017

Michael Anikin

2

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Europe PubMed Central

PubMed publication ID

29 November 2017

William T McAllister

3

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Europe PubMed Central

PubMed publication ID

29 November 2017

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publication date

1 May 2002

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Europe PubMed Central

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29 November 2017

Journal of Molecular Biology

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Europe PubMed Central

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29 November 2017

319

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Europe PubMed Central

PubMed publication ID

29 November 2017

1

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Europe PubMed Central

PubMed publication ID

29 November 2017

37-51

1 reference

Europe PubMed Central

PubMed publication ID

29 November 2017

A general structure for DNA-dependent DNA polymerases.

1 reference

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Structural and mechanistic relationships between nucleic acid polymerases

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Function and structure relationships in DNA polymerases

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Crystal structure of bacteriophage T7 RNA polymerase at 3.3 A resolution

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Structure of T7 RNA polymerase complexed to the transcriptional inhibitor T7 lysozyme

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Structural basis for initiation of transcription from an RNA polymerase-promoter complex

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Structure of a transcribing T7 RNA polymerase initiation complex

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Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution

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Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation.

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Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal

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A thumb subdomain mutant of the large fragment of Escherichia coli DNA polymerase I with reduced DNA binding affinity, processivity, and frameshift fidelity.

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Structural basis of transcription: an RNA polymerase II elongation complex at 3.3 A resolution

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Amino acid substitutions in the two largest subunits of Escherichia coli RNA polymerase that suppress a defective Rho termination factor affect different parts of the transcription complex.

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Identification of a nucleic acid-binding region within the largest subunit of Drosophila melanogaster RNA polymerase II.

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Structure of the replicating complex of a pol alpha family DNA polymerase

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Rapid mutagenesis and purification of phage RNA polymerases

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Processivity in early stages of transcription by T7 RNA polymerase

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A model for the mechanism of polymerase translocation

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Kinetic mechanism of transcription initiation by bacteriophage T7 RNA polymerase

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Characterization of halted T7 RNA polymerase elongation complexes reveals multiple factors that contribute to stability

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Interrupting the template strand of the T7 promoter facilitates translocation of the DNA during initiation, reducing transcript slippage and the release of abortive products

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Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

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Kinetic analysis of T7 RNA polymerase transcription initiation from promoters containing single-stranded regions

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Role of open complex instability in kinetic promoter selection by bacteriophage T7 RNA polymerase

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Asp537, Asp812 are essential and Lys631, His811 are catalytically significant in bacteriophage T7 RNA polymerase activity

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Bacteriophage T7 RNA polymerase and its active-site mutants. Kinetic, spectroscopic and calorimetric characterization

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The specificity loop of T7 RNA polymerase interacts first with the promoter and then with the elongating transcript, suggesting a mechanism for promoter clearance

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Promoter clearance by T7 RNA polymerase. Initial bubble collapse and transcript dissociation monitored by base analog fluorescence

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Studies of promoter recognition and start site selection by T7 RNA polymerase using a comprehensive collection of promoter variants

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The phage RNA polymerases are related to DNA polymerases and reverse transcriptases

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Characterization of structural features important for T7 RNAP elongation complex stability reveals competing complex conformations and a role for the non-template strand in RNA displacement.

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Misincorporation by wild-type and mutant T7 RNA polymerases: identification of interactions that reduce misincorporation rates by stabilizing the catalytically incompetent open conformation.

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Structural studies of protein-nucleic acid interaction: the sources of sequence-specific binding

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Sequence-specific recognition of double helical nucleic acids by proteins

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The mechanism of action of T7 DNA polymerase

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Crystal structure of a thermostable type B DNA polymerase from Thermococcus gorgonarius

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Primer terminus stabilization at the phi 29 DNA polymerase active site. Mutational analysis of conserved motif KXY.

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Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

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The T7 RNA polymerase intercalating hairpin is important for promoter opening during initiation but not for RNA displacement or transcription bubble stability during elongation

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Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

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Compilation and alignment of DNA polymerase sequences

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Extensive homology among the largest subunits of eukaryotic and prokaryotic RNA polymerases

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Identifiers

10.1016/S0022-2836(02)00261-9

1 reference

Europe PubMed Central

PubMed publication ID

29 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

29 November 2017

ResearchGate publication ID

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