(Q44021233)

29 November 2017

title

Rumen microbial (meta)genomics and its application to ruminant production (English)

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29 November 2017

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4

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ORCID Public Data File 2021

29 November 2017

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author name string

D P Morgavi

series ordinal

1

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29 November 2017

W J Kelly

series ordinal

2

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29 November 2017

P H Janssen

series ordinal

3

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29 November 2017

publication date

1 March 2012

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29 November 2017

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29 November 2017

volume

7 Suppl 1

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29 November 2017

page(s)

184-201

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Characterization of a bifunctional xylanase/endoglucanase from yak rumen microorganisms

29 November 2017

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The sheep genome reference sequence: a work in progress

21 January 2018

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Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing.

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A catalog of reference genomes from the human microbiome

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Functional Annotation of Fibrobacter succinogenes S85 Carbohydrate Active Enzymes

21 January 2018

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The genome sequence of taurine cattle: a window to ruminant biology and evolution

21 January 2018

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Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

21 January 2018

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Diversity and strain specificity of plant cell wall degrading enzymes revealed by the draft genome of Ruminococcus flavefaciens FD-1

21 January 2018

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Molecular diversity of the rumen microbiome of Norwegian reindeer on natural summer pasture.

21 January 2018

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Planetary biology--paleontological, geological, and molecular histories of life

21 January 2018

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Novel polyphenol oxidase mined from a metagenome expression library of bovine rumen: biochemical properties, structural analysis, and phylogenetic relationships.

21 January 2018

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Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR.

21 January 2018

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Metagenomic analyses: past and future trends

21 January 2018

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Community structures of fecal bacteria in cattle from different animal feeding operations

21 January 2018

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A window into third-generation sequencing

21 January 2018

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DNA sequencing with chain-terminating inhibitors

21 January 2018

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Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut

21 January 2018

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Quantitative analysis of cellulose degradation and growth of cellulolytic bacteria in the rumen

21 January 2018

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The species concept for prokaryotes

21 January 2018

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Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1.

21 January 2018

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Methanogenesis: genes, genomes, and who's on first?

21 January 2018

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Molecular eco-systems biology: towards an understanding of community function

21 January 2018

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Accurate determination of microbial diversity from 454 pyrosequencing data

21 January 2018

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https://api.crossref.org/works/10.1017%2FS1751731112000419

A human gut microbial gene catalogue established by metagenomic sequencing

21 January 2018

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Snapshot of the eukaryotic gene expression in muskoxen rumen--a metatranscriptomic approach

21 January 2018

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https://api.crossref.org/works/10.1017%2FS1751731112000419

Indication for a new lipolytic enzyme family: isolation and characterization of two esterases from a metagenomic library

21 January 2018

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https://api.crossref.org/works/10.1017%2FS1751731112000419

Comparative genome analysis of Prevotella ruminicola and Prevotella bryantii: insights into their environmental niche.

21 January 2018

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https://api.crossref.org/works/10.1017%2FS1751731112000419

11th International Conference of Archaeozoology. In a cold snap, farmers turned to milk

21 January 2018

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https://api.crossref.org/works/10.1017%2FS1751731112000419

Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1)

21 January 2018

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https://api.crossref.org/works/10.1017%2FS1751731112000419

Complete genome sequence and analysis of Wolinella succinogenes

21 January 2018

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https://api.crossref.org/works/10.1017%2FS1751731112000419

Analysis of the Methanobrevibacter ruminantium draft genome: understanding methanogen biology to inhibit their action in the rumen

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Rumen bacterial diversity dynamics associated with changing from bermudagrass hay to grazed winter wheat diets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Enterotypes of the human gut microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Biochemical and mutational analysis of glutamine synthetase type III from the rumen anaerobe Ruminococcus albus 8.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Marine microbial diversity: can it be determined?

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Genomic evolution during a 10,000-generation experiment with bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

A multifunctional hybrid glycosyl hydrolase discovered in an uncultured microbial consortium from ruminant gut.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Gut microorganisms, mammalian metabolism and personalized health care

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Plant biomass degradation by gut microbiomes: more of the same or something new?

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Microbial ecosystem and methanogenesis in ruminants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Spatial and temporal variations of the bacterial community in the bovine digestive tract

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Isolation of a novel gene encoding a 3,5,6-trichloro-2-pyridinol degrading enzyme from a cow rumen metagenomic library

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Genome sequence of the ruminal bacterium Megasphaera elsdenii

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Methane mitigation in ruminants: from microbe to the farm scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Microbial cellulose utilization: fundamentals and biotechnology

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Differential expression of methanogenesis genes of Methanothermobacter thermoautotrophicus (formerly Methanobacterium thermoautotrophicum) in pure culture and in cocultures with fatty acid-oxidizing syntrophs

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Isolation and biochemical characterization of two lipases from a metagenomic library of China Holstein cow rumen

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Symbiotic gut microbes modulate human metabolic phenotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Evolution of mammals and their gut microbes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Worlds within worlds: evolution of the vertebrate gut microbiota

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

The genome sequence of the rumen methanogen Methanobrevibacter ruminantium reveals new possibilities for controlling ruminant methane emissions

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Novel microbial diversity adherent to plant biomass in the herbivore gastrointestinal tract, as revealed by ribosomal intergenic spacer analysis and rrs gene sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Molecular monitoring and isolation of previously uncultured bacterial strains from the sheep rumen

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Characterization of rumen ciliate community composition in domestic sheep, deer, and cattle, feeding on varying diets, by means of PCR-DGGE and clone libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Status of the phylogenetic diversity census of ruminal microbiomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Rumen microbiome composition determined using two nutritional models of subacute ruminal acidosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

The glycobiome of the rumen bacterium Butyrivibrio proteoclasticus B316(T) highlights adaptation to a polysaccharide-rich environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Prospects for systems biology and modeling of the gut microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Chemical composition of the peptidoglycan-free cell walls of methanogenic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Bias and artifacts in multitemplate polymerase chain reactions (PCR).

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Structure of the archaeal community of the rumen

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Influence of hydrogen on rumen methane formation and fermentation balances through microbial growth kinetics and fermentation thermodynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Bacterial contributions to mammalian gut development

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

The genome sequence of the capnophilic rumen bacterium Mannheimia succiniciproducens

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Metagenomic discovery of biomass-degrading genes and genomes from cow rumen

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Presence of novel, potentially homoacetogenic bacteria in the rumen as determined by analysis of formyltetrahydrofolate synthetase sequences from ruminants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Microbial Evolution, Diversity, and Ecology: A Decade of Ribosomal RNA Analysis of Uncultivated Microorganisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Functional gene analysis suggests different acetogen populations in the bovine rumen and tammar wallaby forestomach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Linkage of microbial ecology to phenotype: correlation of rumen microbial ecology to cattle's feed efficiency

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Anaerobic fungi: Neocallimastigomycota

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Systematic artifacts in metagenomes from complex microbial communities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Metagenomic analysis of the human distal gut microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Effects of bacterial direct-fed microbials on ruminal fermentation, blood variables, and the microbial populations of feedlot cattle

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Bioprospecting metagenomes: glycosyl hydrolases for converting biomass

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Biochemical and structural features of a novel cyclodextrinase from cow rumen metagenome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Characterization of variation in rumen methanogenic communities under different dietary and host feed efficiency conditions, as determined by PCR-denaturing gradient gel electrophoresis analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Novel glycoside hydrolases identified by screening a Chinese Holstein dairy cow rumen-derived metagenome library

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Evidence of quorum sensing in the rumen ecosystem: detection of N-acyl homoserine lactone autoinducers in ruminal contents.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Beyond diversity: functional microbiomics of the human colon

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

16S rDNA library-based analysis of ruminal bacterial diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Diversity of the human intestinal microbial flora

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

What is microbial community ecology?

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Functional cloning and expression of a novel Endo-alpha-1,5-L-arabinanase from a metagenomic library

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Animal-to-animal variation in fecal microbial diversity among beef cattle

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Cloning and characterization of a novel exo-alpha-1,5-L-arabinanase gene and the enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

A novel xyloglucan-specific endo-beta-1,4-glucanase: biochemical properties and inhibition studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Isolation and partial characterization of novel genes encoding acidic cellulases from metagenomes of buffalo rumens

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Cloning and characterization of an exo-xylogucanase from rumenal microbial metagenome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Cellulosomes: plant-cell-wall-degrading enzyme complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Functional metagenomic profiling of nine biomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Microbial diversity of cellulose hydrolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Evolution, consequences and future of plant and animal domestication

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

ARISA analysis of ruminal bacterial community dynamics in lactating dairy cows during the feeding cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Ruminococcus albus 8 mutants defective in cellulose degradation are deficient in two processive endocellulases, Cel48A and Cel9B, both of which possess a novel modular architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

An ecological and evolutionary perspective on human-microbe mutualism and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Effect of feeding propionibacteria on milk production by early lactation dairy cows

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Quantitation and diversity analysis of ruminal methanogenic populations in response to the antimethanogenic compound bromochloromethane.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Lessons from the cow: what the ruminant animal can teach us about consolidated bioprocessing of cellulosic biomass

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Laboratory evolution and multi-platform genome re-sequencing of the cellulolytic actinobacterium Thermobifida fusca

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Manipulating ruminal fermentation: a microbial ecological perspective.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Practical application of self-organizing maps to interrelate biodiversity and functional data in NGS-based metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Isolation and characterization of novel cellulase genes from uncultured microorganisms in different environmental niches

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Evolutionary adaptations of ruminants and their potential relevance for modern production systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

The human microbiome project

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Catalytic role of conserved HQGE motif in the CE6 carbohydrate esterase family

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Long-term defaunation increases the abundance of cellulolytic ruminococci and methanogens but does not affect the bacterial and methanogen diversity in the rumen of sheep

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Macroecology of the host determines microecology of endobionts: protozoal faunas vary with wild ruminant feeding type and body mass

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

Xylanases and carboxymethylcellulases of the rumen protozoa Polyplastron multivesiculatum, Eudiplodinium maggii and Entodinium sp

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Effects of active dry yeasts on the rumen microbial ecosystem: Past, present and future

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Colonization-induced host-gut microbial metabolic interaction

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Understanding Bias in Microbial Community Analysis Techniques due to rrn Operon Copy Number Heterogeneity

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Immunization with Streptococcus bovis protects against lactic acidosis in sheep

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Metabolomics of a superorganism

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Cellulolytic activity of the rumen bacterium Bacteroides succinogenes

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Diversity, abundance and characterization of ruminal cysteine phytases suggest their important role in phytate degradation

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Specificity and sensitivity of eubacterial primers utilized for molecular profiling of bacteria within complex microbial ecosystems

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Use of 'natural' products as alternatives to antibiotic feed additives in ruminant production.

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Isolation of previously uncultured rumen bacteria by dilution to extinction using a new liquid culture medium

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Interactions between Treponema bryantii and cellulolytic bacteria in the in vitro degradation of straw cellulose

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

https://api.crossref.org/works/10.1017%2FS1751731112000419

1 reference

7 January 2021

Rumen protozoa and methanogenesis: not a simple cause-effect relationship

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Making contact with sequencing's fourth generation

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Consider something viral in your search

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

The species concept for prokaryotes

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

PCR-DGGE analysis reveals a distinct diversity in the bacterial population attached to the rumen epithelium

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Contributions of microbes in vertebrate gastrointestinal tract to production and conservation of nutrients

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

Gut microbiology - broad genetic diversity, yet specific metabolic niches

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

The persistence of bacterial and methanogenic archaeal communities residing in the rumen of young lambs

1 reference

https://api.crossref.org/works/10.1017%2FS1751731112000419

7 January 2021

10.1017/S1751731112000419

Identifiers

DOI

1 reference

29 November 2017

1 reference