(Q44040258)

English

Folding problems of the 5' splice site containing the P1 stem of the group I thymidylate synthase intron: substrate binding inhibition in vitro and mis-splicing in vivo

scientific article published on 26 February 2002

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scholarly article

1 reference

Europe PubMed Central

29 November 2017

Folding problems of the 5' splice site containing the P1 stem of the group I thymidylate synthase intron: substrate binding inhibition in vitro and mis-splicing in vivo (English)

1 reference

Europe PubMed Central

29 November 2017

author name string

Andrea Pichler

1

1 reference

Europe PubMed Central

29 November 2017

Renée Schroeder

2

1 reference

Europe PubMed Central

29 November 2017

language of work or name

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publication date

26 February 2002

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Europe PubMed Central

29 November 2017

number of pages

7

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based on heuristic

inferred from page(s)

Journal of Biological Chemistry

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Europe PubMed Central

29 November 2017

277

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Europe PubMed Central

29 November 2017

20

1 reference

Europe PubMed Central

29 November 2017

17987-17993

1 reference

Europe PubMed Central

29 November 2017

Self-splicing of group I introns

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Beyond kinetic traps in RNA folding

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

An alternative helix in the 26S rRNA promotes excision and integration of the Tetrahymena intervening sequence

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Refolding of rRNA exons enhances dissociation of the Tetrahymena intron

1 reference

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21 January 2018

The neurospora CYT-18 protein suppresses defects in the phage T4 td intron by stabilizing the catalytically active structure of the intron core

1 reference

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21 January 2018

Assembly of a ribonucleoprotein catalyst by tertiary structure capture

1 reference

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21 January 2018

Sequence of introns and flanking exons in wild-type and box3 mutants of cytochrome b reveals an interlaced splicing protein coded by an intron

1 reference

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21 January 2018

A protein encoded by a group I intron in Aspergillus nidulans directly assists RNA splicing and is a DNA endonuclease

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Evidence for processivity and two-step binding of the RNA substrate from studies of J1/2 mutants of the Tetrahymena ribozyme

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Quantitating tertiary binding energies of 2' OH groups on the P1 duplex of the Tetrahymena ribozyme: intrinsic binding energy in an RNA enzyme

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Characterization of a local folding event of the Tetrahymena group I ribozyme: effects of oligonucleotide substrate length, pH, and temperature on the two substrate binding steps

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Direct measurement of oligonucleotide substrate binding to wild-type and mutant ribozymes from Tetrahymena

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Tertiary interactions with the internal guide sequence mediate docking of the P1 helix into the catalytic core of the Tetrahymena ribozyme

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

An important base triple anchors the substrate helix recognition surface within the Tetrahymena ribozyme active site

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Contributions of 2'-hydroxyl groups of the RNA substrate to binding and catalysis by the Tetrahymena ribozyme. An energetic picture of an active site composed of RNA.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

A ribosomal function is necessary for efficient splicing of the T4 phage thymidylate synthase intron in vivo

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Activation of a cryptic 5' splice site in the upstream exon of the phage T4 td transcript: exon context, missplicing, and mRNA deletion in a fidelity mutant.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Neomycin B inhibits splicing of the td intron indirectly by interfering with translation and enhances missplicing in vivo

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Effects of mutations of the bulged nucleotide in the conserved P7 pairing element of the phage T4 td intron on ribozyme function

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme: enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Rapid and efficient site-specific mutagenesis without phenotypic selection

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Assaying RNA chaperone activity in vivo using a novel RNA folding trap

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Specificity from steric restrictions in the guanosine binding pocket of a group I ribozyme

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: comparison with in vivo evolution

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Representation of the secondary and tertiary structure of group I introns

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Influence of specific mutations on the thermal stability of the td group I intron in vitro and on its splicing efficiency in vivo: a comparative study

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Genetic delineation of functional components of the group I intron in the phage T4 td gene

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Complementary sets of noncanonical base pairs mediate RNA helix packing in the group I intron active site

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Folding intermediates of a self-splicing RNA: mispairing of the catalytic core

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Facilitation of Group I Splicing in Vivo: Misfolding of the Tetrahymena IVS and the Role of Ribosomal RNA Exons

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Dynamics of ribozyme binding of substrate revealed by fluorescence-detected stopped-flow methods

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

A chemical phylogeny of group I introns based upon interference mapping of a bacterial ribozyme

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Deletion-tolerance and trans-splicing of the bacteriophage T4 td intron

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Non-competitive inhibition of group I intron RNA self-splicing by aminoglycoside antibiotics

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Predicting thermodynamic properties of RNA

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M111798200

21 January 2018

Identifiers

10.1074/JBC.M111798200

1 reference

Europe PubMed Central

29 November 2017

1 reference

Europe PubMed Central

29 November 2017

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