(Q44052792)

29 November 2017

A distance-based least-square method for dating speciation events (English)

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29 November 2017

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Xuhua Xia

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author name string

Qun Yang

series ordinal

2

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29 November 2017

12 February 2011

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Molecular Phylogenetics and Evolution

29 November 2017

12

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based on heuristic

inferred from page(s)

published in

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29 November 2017

59

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29 November 2017

2

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29 November 2017

342-353

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Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences

29 November 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Rates of DNA sequence evolution differ between taxonomic groups

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Conflict among individual mitochondrial proteins in resolving the phylogeny of eutherian orders

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

An extensive study of mutation and selection on the wobble nucleotide in tRNA anticodons in fungal mitochondrial genomes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Phylogenetic analysis. Models and estimation procedures

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Estimation of time of divergence from phylogenetic studies

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

PTreeRec: Phylogenetic Tree Reconstruction based on genome BLAST distance.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

BEAST: Bayesian evolutionary analysis by sampling trees

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Reconstructing genealogies of serial samples under the assumption of a molecular clock using serial-sample UPGMA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

The inference of stepwise changes in substitution rates using serial sequence samples

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Whole genome molecular phylogeny of large dsDNA viruses using composition vector method

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

On the optimization principle in phylogenetic analysis and the minimum-evolution criterion.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Neighbor-joining revealed.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Breakpoint medians and breakpoint phylogenies: a fixed-parameter approach.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Whole-genome prokaryotic phylogeny

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Use of whole genome sequence data to infer baculovirus phylogeny

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Coevolution of codon usage and tRNA genes leads to alternative stable states of biased codon usage

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Converting distance to time: application to human evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

The molecular clock runs more slowly in man than in apes and monkeys

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Reconstruction of phylogenetic trees and estimation of divergence times under nonconstant rates of evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Dating the time of viral subtype divergence

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

A new sequence distance measure for phylogenetic tree construction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

A mitogenomic timescale for birds detects variable phylogenetic rates of molecular evolution and refutes the standard molecular clock

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Catarrhine primate divergence dates estimated from complete mitochondrial genomes: concordance with fossil and nuclear DNA evidence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Estimating divergence dates from molecular sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Inferring speciation times under an episodic molecular clock

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

A Nonparametric Approach to Estimating Divergence Times in the Absence of Rate Constancy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Testing the molecular clock: molecular and paleontological estimates of divergence times in the Echinoidea (Echinodermata).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Prospects for inferring very large phylogenies by using the neighbor-joining method

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Erratic rates of molecular evolution and incongruence of fossil and molecular divergence time estimates in Ostracoda (Crustacea).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Evidence for higher rates of nucleotide substitution in rodents than in man

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

The rate heterogeneity of nonsynonymous substitutions in mammalian mitochondrial genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Mutation and selection on the anticodon of tRNA genes in vertebrate mitochondrial genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

The cost of wobble translation in fungal mitochondrial genomes: integration of two traditional hypotheses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Information-theoretic indices and an approximate significance test for testing the molecular clock hypothesis with genetic distances

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

DAMBE: software package for data analysis in molecular biology and evolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

On transition bias in mitochondrial genes of pocket gophers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

An index of substitution saturation and its application

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Tree and rate estimation by local evaluation of heterochronous nucleotide data.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

Estimation of primate speciation dates using local molecular clocks

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2011.01.017

10.1016/J.YMPEV.2011.01.017

7 January 2021

Identifiers

DOI

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29 November 2017

1 reference

PubMed ID

21320613