(Q44232967)

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3 April 2020

title

Evolutionary patterns of genic DNA methylation vary across land plants (English)

1 reference

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3 April 2020

0 references

1 reference

1

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3 April 2020

3

Brandon S Gaut

1 reference

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3 April 2020

author name string

Jin-Hua Ran

series ordinal

2

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3 April 2020

publication date

25 January 2016

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3 April 2020

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3 April 2020

volume

2

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3 April 2020

page(s)

15222

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https://scigraph.springernature.com/pub.10.1038/nplants.2015.222

3 April 2020

exact match

0 references

cites work

Gene body methylation is conserved between plant orthologs and is of evolutionary consequence

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Evolution of DNA methylation patterns in the Brassicaceae is driven by differences in genome organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Ferns diversified in the shadow of angiosperms

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Land plant evolutionary timeline: gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Transposable elements and the epigenetic regulation of the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Trans chromosomal methylation in Arabidopsis hybrids

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Genome-wide evolutionary analysis of eukaryotic DNA methylation.

21 January 2018

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DNA methylation and the frequency of CpG in animal DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Differential methylation of genes and repeats in land plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.

21 January 2018

1 reference

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The Amborella Genome and the Evolution of Flowering Plants

21 January 2018

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https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Transcriptional gene silencing by Arabidopsis microrchidia homologues involves the formation of heteromers

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis

21 January 2018

1 reference

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Global DNA cytosine methylation as an evolving trait: phylogenetic signal and correlated evolution with genome size in angiosperms

21 January 2018

1 reference

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A triptych of the evolution of plant transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin

21 January 2018

1 reference

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Accessible DNA and relative depletion of H3K9me2 at maize loci undergoing RNA-directed DNA methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

An Arabidopsis jmjC domain protein protects transcribed genes from DNA methylation at CHG sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Functions of DNA methylation: islands, start sites, gene bodies and beyond

21 January 2018

1 reference

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DNA methylation as a system of plant genomic immunity.

21 January 2018

1 reference

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Deposition of histone variant H2A.Z within gene bodies regulates responsive genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Chromatin indexing in Arabidopsis: an epigenomic tale of tails and more

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

FrameD: A flexible program for quality check and gene prediction in prokaryotic genomes and noisy matured eukaryotic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Microbial gene identification using interpolated Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Trimmomatic: a flexible trimmer for Illumina sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications.

21 January 2018

1 reference

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Fast gapped-read alignment with Bowtie 2

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

Multigene phylogeny of the green lineage reveals the origin and diversification of land plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPLANTS.2015.222

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

21 January 2018

1 reference

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A nonparametric method for accommodating and testing across-site rate variation

21 January 2018

1 reference

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A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

21 January 2018

1 reference

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Inparanoid: a comprehensive database of eukaryotic orthologs

21 January 2018

1 reference

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21 January 2018

Identifiers

DOI

10.1038/NPLANTS.2015.222

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27249194%20AND%20SRC:MED&resulttype=core&format=json

3 April 2020

1 reference