(Q44557392)

4 December 2017

title

Influence of mobile DNA-protein-DNA bridges on DNA configurations: coarse-grained Monte-Carlo simulations (English)

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4 December 2017

Renko de Vries

1

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4 December 2017

language of work or name

English

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publication date

1 September 2011

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Journal of Chemical Physics

4 December 2017

published in

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4 December 2017

volume

135

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4 December 2017

issue

12

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4 December 2017

page(s)

125104

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Structural dynamics of the lac repressor-DNA complex revealed by a multiscale simulation

4 December 2017

cites work

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Modeling the Lac repressor-operator assembly: the influence of DNA looping on Lac repressor conformation

21 January 2018

1 reference

Effects of the nucleoid protein HU on the structure, flexibility, and ring-closure properties of DNA deduced from Monte Carlo simulations

21 January 2018

1 reference

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

21 January 2018

1 reference

H-NS mediated compaction of DNA visualised by atomic force microscopy

21 January 2018

1 reference

Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation

21 January 2018

1 reference

Oligomerization of the chromatin-structuring protein H-NS.

21 January 2018

1 reference

High-affinity DNA binding sites for H-NS provide a molecular basis for selective silencing within proteobacterial genomes

21 January 2018

1 reference

Sequence-specific recognition of DNA by the C-terminal domain of nucleoid-associated protein H-NS.

21 January 2018

1 reference

Protein-mediated molecular bridging: a key mechanism in biopolymer organization

21 January 2018

1 reference

A divalent switch drives H-NS/DNA-binding conformations between stiffening and bridging modes.

21 January 2018

1 reference

Structural basis for preferential binding of H-NS to curved DNA.

21 January 2018

1 reference

Statistical mechanics of sequence-dependent circular DNA and its application for DNA cyclization

21 January 2018

1 reference

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

21 January 2018

1 reference

Structural transitions and elasticity from torque measurements on DNA.

21 January 2018

1 reference

Ecologic genomics of DNA: upstream bending in prokaryotic promoters

21 January 2018

1 reference

Genome organisation and chromatin structure in Escherichia coli

21 January 2018

1 reference

DNA curvature and flexibility in vitro and in vivo

21 January 2018

1 reference

Thermoregulation of Shigella and Escherichia coli EIEC pathogenicity. A temperature-dependent structural transition of DNA modulates accessibility of virF promoter to transcriptional repressor H-NS.

21 January 2018

1 reference

DNA condensation in bacteria: Interplay between macromolecular crowding and nucleoid proteins

21 January 2018

1 reference

The Major Architects of Chromatin: Architectural Proteins in Bacteria, Archaea and Eukaryotes

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1063/1.3636383

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release_p2tzygbbdfdwfemu4af7xkcgp4

4 December 2017

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/p2tzygbbdfdwfemu4af7xkcgp4

mapped directly with Wikidata item

24 November 2022

based on heuristic

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