(Q45108602)

English

Phylogenetic analysis of proteins associated in the four major energy metabolism systems: photosynthesis, aerobic respiration, denitrification, and sulfur respiration

scientific article published in August 2004

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scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

9 December 2017

Phylogenetic analysis of proteins associated in the four major energy metabolism systems: photosynthesis, aerobic respiration, denitrification, and sulfur respiration (English)

1 reference

Europe PubMed Central

PubMed publication ID

9 December 2017

0 references

1 reference

based on heuristic

inferred from title

denitrification

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author name string

Takeshi Tomiki

1

1 reference

Europe PubMed Central

PubMed publication ID

9 December 2017

Naruya Saitou

2

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Europe PubMed Central

PubMed publication ID

9 December 2017

publication date

1 August 2004

1 reference

Europe PubMed Central

PubMed publication ID

9 December 2017

Journal of Molecular Evolution

1 reference

Europe PubMed Central

PubMed publication ID

9 December 2017

59

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Europe PubMed Central

PubMed publication ID

9 December 2017

2

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Europe PubMed Central

PubMed publication ID

9 December 2017

158-176

1 reference

Europe PubMed Central

PubMed publication ID

9 December 2017

https://scigraph.springernature.com/pub.10.1007/s00239-004-2610-2

0 references

Phylogenetic relationship of muscle tissues deduced from superimposition of gene trees

1 reference

https://api.crossref.org/works/10.1007%2FS00239-004-2610-2

21 January 2018

Cloning and nucleotide sequence of the psrA gene of Wolinella succinogenes polysulphide reductase

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Engineering a novel iron-sulfur cluster into the catalytic subunit of Escherichia coli dimethyl-sulfoxide reductase.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The high resolution crystal structure of DMSO reductase in complex with DMSO

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The neighbor-joining method: a new method for reconstructing phylogenetic trees

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Interactions between the molybdenum cofactor and iron-sulfur clusters of Escherichia coli dimethylsulfoxide reductase.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Amino acid identities in the three redox center-carrying polypeptides of cytochrome bc1/b6f complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sulfite reductase structure at 1.6 A: evolution and catalysis for reduction of inorganic anions

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The relationship between structure and function for the sulfite reductases

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence and nitrate regulation of the Arabidopsis thaliana mRNA encoding nitrate reductase, a metalloflavoprotein with three functional domains

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of DMSO reductase: redox-linked changes in molybdopterin coordination

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cytochrome oxidase evolved by tinkering with denitrification enzymes

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of the FAD-containing fragment of corn nitrate reductase at 2.5 A resolution: relationship to other flavoprotein reductases

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dissimilatory sulfite reductase from Archaeoglobus profundus and Desulfotomaculum thermocisternum: phylogenetic and structural implications from gene sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Animal plasma membrane energization by proton-motive V-ATPases

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The KEGG databases at GenomeNet

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural studies on corn nitrate reductase: refined structure of the cytochrome b reductase fragment at 2.5 A, its ADP complex and an active-site mutant and modeling of the cytochrome b domain

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Enzymatic redox chemistry: a proposed reaction pathway for the six-electron reduction of SO3(2-) to S2- by the assimilatory-type sulfite reductase from Desulfovibrio vulgaris (Hildenborough)

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of formate dehydrogenase H: catalysis involving Mo, molybdopterin, selenocysteine, and an Fe4S4 cluster

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The genome sequence of Rickettsia prowazekii and the origin of mitochondria

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prokaryotic nitrate reduction: molecular properties and functional distinction among bacterial nitrate reductases

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dating the rise of atmospheric oxygen

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Probing the catalytic mechanism of sulfite reductase by X-ray crystallography: structures of the Escherichia coli hemoprotein in complex with substrates, inhibitors, intermediates, and products

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NiaA, the structural nitrate reductase gene of Phytophthora infestans: isolation, characterization and expression analysis in Aspergillus nidulans

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A reduced pyridine nucleotides-diaphorase activity associated to the assimilatory nitrite reductase complex from Neurospora crassa

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular basis of proton motive force generation: structure of formate dehydrogenase-N

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of dimethyl sulfoxide reductase from Rhodobacter capsulatus at 1.88 A resolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Models for Molybdenum Coordination during the Catalytic Cycle of Periplasmic Nitrate Reductase fromParacoccus denitrificansDerived from EPR and EXAFS Spectroscopy†

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cloning and disruption of the YNR1 gene encoding the nitrate reductase apoenzyme of the yeast Hansenula polymorpha

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and function of cytochrome bc complexes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterization of the paramagnetic iron-containing redox centres of Thiosphaera pantotropha periplasmic nitrate reductase

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MEGA2: molecular evolutionary genetics analysis software

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Aspergillus niger niaD gene encoding nitrate reductase: upstream nucleotide and amino acid sequence comparisons

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Organization and evolution of structural elements within complex I

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Iron-sulfur clusters/semiquinones in complex I.

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molybdenum cofactor properties and [Fe-S] cluster coordination in Escherichia coli nitrate reductase A: investigation by site-directed mutagenesis of the conserved his-50 residue in the NarG subunit

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of oxidized trimethylamine N-oxide reductase from Shewanella massilia at 2.5 A resolution

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Derived amino acid sequences of the nosZ gene (respiratory N2O reductase) from Alcaligenes eutrophus, Pseudomonas aeruginosa and Pseudomonas stutzeri reveal potential copper-binding residues. Implications for the CuA site of N2O reductase and cytoch

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Pfam protein families database

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of the first dissimilatory nitrate reductase at 1.9 A solved by MAD methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Dimethylsulfoxide reductase: an enzyme capable of catalysis with either molybdenum or tungsten at the active site

1 reference

https://pubmed.ncbi.nlm.nih.gov/15486691

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00239-004-2610-2

1 reference

Europe PubMed Central

PubMed publication ID

9 December 2017

Dimensions Publication ID

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

9 December 2017

ResearchGate publication ID

0 references

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