(Q45304449)

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Increased flexibility as a strategy for cold adaptation: a comparative molecular dynamics study of cold- and warm-active uracil DNA glycosylase

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scholarly article

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Europe PubMed Central

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11 December 2017

Increased flexibility as a strategy for cold adaptation: a comparative molecular dynamics study of cold- and warm-active uracil DNA glycosylase (English)

1 reference

Europe PubMed Central

PubMed publication ID

11 December 2017

2

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Europe PubMed Central

PubMed publication ID

11 December 2017

3

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Europe PubMed Central

PubMed publication ID

11 December 2017

Bjørn Olav Brandsdal

4

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Europe PubMed Central

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11 December 2017

author name string

Magne Olufsen

1

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11 December 2017

language of work or name

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publication date

3 March 2005

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11 December 2017

Journal of Biological Chemistry

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11 December 2017

280

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Europe PubMed Central

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11 December 2017

18

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11 December 2017

18042-18048

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Europe PubMed Central

PubMed publication ID

11 December 2017

Psychrophilic enzymes: revisiting the thermodynamic parameters of activation may explain local flexibility

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Psychrophilic enzymes: molecular basis of cold adaptation

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Hot spots in cold adaptation: localized increases in conformational flexibility in lactate dehydrogenase A4 orthologs of Antarctic notothenioid fishes

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Structural and functional adaptations to extreme temperatures in psychrophilic, mesophilic, and thermophilic DNA ligases

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Some like it cold: biocatalysis at low temperatures.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Directed evolution study of temperature adaptation in a psychrophilic enzyme

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Cold adapted enzymes.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Cold-adapted enzymes: from fundamentals to biotechnology.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Structural adaptations of the cold-active citrate synthase from an Antarctic bacterium

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Electrostatic effects play a central role in cold adaptation of trypsin

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Crystal structure and mutational analysis of human uracil-DNA glycosylase: structural basis for specificity and catalysis

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

The structure of uracil-DNA glycosylase from Atlantic cod (Gadus morhua) reveals cold-adaptation features

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

The structural basis of specific base-excision repair by uracil-DNA glycosylase

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

X-ray analysis of a complex of Escherichia coli uracil DNA glycosylase (EcUDG) with a proteinaceous inhibitor. The structure elucidation of a prokaryotic UDG

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

A nucleotide-flipping mechanism from the structure of human uracil-DNA glycosylase bound to DNA

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA.

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Electrostatic guidance of glycosyl cation migration along the reaction coordinate of uracil DNA glycosylase

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Identification, cloning, and expression of uracil-DNA glycosylase from Atlantic cod (Gadus morhua): characterization and homology modeling of the cold-active catalytic domain

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Crystallization and preliminary X-ray diffraction analysis of a cold-adapted uracil-DNA glycosylase from Atlantic cod (Gadus morhua).

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Improved methods for building protein models in electron density maps and the location of errors in these models

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Uracil-DNA glycosylase acts by substrate autocatalysis

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Comparison of simple potential functions for simulating liquid water

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Molecular dynamics with coupling to an external bath

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M500948200

21 January 2018

Identifiers

10.1074/JBC.M500948200

1 reference

Europe PubMed Central

PubMed publication ID

11 December 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

11 December 2017

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