(Q45325005)

English

Structure-based pKa prediction provides a thermodynamic basis for the role of histidines in pH-induced conformational transitions in dengue virus

scientific article published on 31 October 2015

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

13 December 2017

Structure-based pKa prediction provides a thermodynamic basis for the role of histidines in pH-induced conformational transitions in dengue virus (English)

1 reference

Europe PubMed Central

PMC publication ID

13 December 2017

1 reference

based on heuristic

inferred from title

Anders Wallqvist

object named as

Anders Wallqvist

3

0 references

author name string

Sidhartha Chaudhury

1

1 reference

Europe PubMed Central

PMC publication ID

13 December 2017

Daniel R Ripoll

2

1 reference

Europe PubMed Central

PMC publication ID

13 December 2017

publication date

31 October 2015

1 reference

Europe PubMed Central

PMC publication ID

13 December 2017

Biochemistry and Biophysics Reports

1 reference

Europe PubMed Central

PMC publication ID

13 December 2017

4

1 reference

Europe PubMed Central

PMC publication ID

13 December 2017

375-385

1 reference

Europe PubMed Central

PMC publication ID

13 December 2017

Atomic-level functional model of dengue virus Envelope protein infectivity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

The membrane-proximal "stem" region increases the stability of the flavivirus E protein postfusion trimer and modulates its structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Immature and Mature Dengue Serotype 1 Virus Structures Provide Insight into the Maturation Process

1 reference

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25 May 2018

Cryo-EM structure of the mature dengue virus at 3.5-Å resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Rapid calculation of protein pKa values using Rosetta

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Stability of trimeric DENV envelope protein at low and neutral pH: an insight from MD study.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Role of pH on dimeric interactions for DENV envelope protein: an insight from molecular dynamics study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Large shifts in pKa values of lysine residues buried inside a protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

In vitro and in vivo studies identify important features of dengue virus pr-E protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Probing the mechanism of pH-induced large-scale conformational changes in dengue virus envelope protein using atomistic simulations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Protonation of Individual Histidine Residues Is Not Required for the pH-Dependent Entry of West Nile Virus: Evaluation of the "Histidine Switch" Hypothesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

PSPP: a protein structure prediction pipeline for computing clusters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

A Stable Prefusion Intermediate of the Alphavirus Fusion Protein Reveals Critical Features of Class II Membrane Fusion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Identification of specific histidines as pH sensors in flavivirus membrane fusion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Structure of the immature dengue virus at low pH primes proteolytic maturation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

The flavivirus precursor membrane-envelope protein complex: structure and maturation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Characterization of a Structural Intermediate of Flavivirus Membrane Fusion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

A structural perspective of the flavivirus life cycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Modeling structurally variable regions in homologous proteins with rosetta.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Structure of the dengue virus envelope protein after membrane fusion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

A ligand-binding pocket in the dengue virus envelope glycoprotein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Membrane interactions of the tick-borne encephalitis virus fusion protein E at low pH.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Role of metastability and acidic pH in membrane fusion by tick-borne encephalitis virus.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Mapping of functional elements in the stem-anchor region of tick-borne encephalitis virus envelope protein E

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Complete measurement of the pKa values of the carboxyl and imidazole groups in Bacillus circulans xylanase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Oligomeric rearrangement of tick-borne encephalitis virus envelope proteins induced by an acidic pH

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

25 May 2018

Determination of pKa values of individual histidine residues in proteins using mass spectrometry.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

15 August 2018

Variability in the pKa of histidine side-chains correlates with burial within proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5669449

15 August 2018

Using multiple structure alignments, fast model building, and energetic analysis in fold recognition and homology modeling

1 reference

https://pubmed.ncbi.nlm.nih.gov/29124227

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.BBREP.2015.10.014

1 reference

Europe PubMed Central

PMC publication ID

13 December 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 December 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 December 2017

ResearchGate publication ID

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