(Q45720641)

15 December 2017

title

Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads (English)

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15 December 2017

Zechen Chong

1

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15 December 2017

Jue Ruan

series ordinal

2

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15 December 2017

Chung-I Wu

series ordinal

3

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15 December 2017

language of work or name

English

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publication date

1 September 2012

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15 December 2017

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15 December 2017

volume

28

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15 December 2017

issue

21

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15 December 2017

page(s)

2732-2737

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Replacing suffix trees with enhanced suffix arrays

15 December 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Rapid SNP discovery and genetic mapping using sequenced RAD markers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

SEED: efficient clustering of next-generation sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Search and clustering orders of magnitude faster than BLAST

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Resolving postglacial phylogeography using high-throughput sequencing.

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Local de novo assembly of RAD paired-end contigs using short sequencing reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

DNACLUST: accurate and efficient clustering of phylogenetic marker genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Parallel, tag-directed assembly of locally derived short sequence reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Fast and accurate long-read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

SOAP: short oligonucleotide alignment program

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

PatternHunter: faster and more sensitive homology search

21 January 2018

1 reference

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RAD marker microarrays enable rapid mapping of zebrafish mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Inferring phylogenies from RAD sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

SlideSort: all pairs similarity search for short reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Paired-end RAD-seq for de novo assembly and marker design without available reference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS482

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

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10.1093/BIOINFORMATICS/BTS482

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/ChongRW12

15 December 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference