(Q45745245)

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Crystallization and structure determination of a hepatitis delta virus ribozyme: use of the RNA-binding protein U1A as a crystallization module

scientific article published in January 2000

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scholarly article

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Europe PubMed Central

PubMed publication ID

15 December 2017

http://europepmc.org/abstract/MED/10623545

Crystallization and structure determination of a hepatitis delta virus ribozyme: use of the RNA-binding protein U1A as a crystallization module (English)

1 reference

Europe PubMed Central

PubMed publication ID

15 December 2017

http://europepmc.org/abstract/MED/10623545

protein structure

0 references

RNA-binding proteins

1 reference

based on heuristic

inferred from title

hepatitis delta virus

object named as

hepatitis delta virus

1 reference

based on heuristic

inferred from title

Jennifer Doudna

2

object named as

Doudna JA

1 reference

Europe PubMed Central

PubMed publication ID

15 December 2017

author name string

Ferré-D'Amaré AR

1

1 reference

Europe PubMed Central

PubMed publication ID

15 December 2017

http://europepmc.org/abstract/MED/10623545

language of work or name

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publication date

1 January 2000

1 reference

Europe PubMed Central

PubMed publication ID

15 December 2017

http://europepmc.org/abstract/MED/10623545

number of pages

16

1 reference

based on heuristic

inferred from page(s)

Journal of Molecular Biology

1 reference

Europe PubMed Central

PubMed publication ID

15 December 2017

http://europepmc.org/abstract/MED/10623545

295

1 reference

Europe PubMed Central

PubMed publication ID

15 December 2017

http://europepmc.org/abstract/MED/10623545

3

1 reference

Europe PubMed Central

PubMed publication ID

15 December 2017

http://europepmc.org/abstract/MED/10623545

541-556

1 reference

Europe PubMed Central

PubMed publication ID

15 December 2017

http://europepmc.org/abstract/MED/10623545

Domain elucidation by mass spectrometry

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Crystal structure of a group I ribozyme domain: principles of RNA packing

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Crystal structure of the RNA-binding domain of the U1 small nuclear ribonucleoprotein A

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Modification interference analysis of a self-cleaving RNA from hepatitis delta virus.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

A general module for RNA crystallization

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

The molecular biology of hepatitis delta virus

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Secondary structure content of the HDV ribozyme in 95% formamide

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Ribozymes: A Distinct Class of Metalloenzymes

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

PROCHECK: a program to check the stereochemical quality of protein structures

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Methods used in the structure determination of bovine mitochondrial F1 ATPase

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Identification of phosphate oxygens that are important for self-cleavage activity of the HDV ribozyme by phosphorothioate substitution interference analysis

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Maintaining protein stability

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Use of cis- and trans-ribozymes to remove 5' and 3' heterogeneities from milligrams of in vitro transcribed RNA.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Crystal structure of a conserved ribosomal protein-RNA complex

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Crystallization of Escherichia coli catabolite gene activator protein with its DNA binding site. The use of modular DNA.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Crystal structure of a hepatitis delta virus ribozyme

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Self-cleavage activity of the genomic HDV ribozyme in the presence of various divalent metal ions

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Imidazole rescue of a cytosine mutation in a self-cleaving ribozyme

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Crystal structure of an RNA dodecamer containing the Escherichia coli Shine-Dalgarno sequence

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

On the role of magnesium ions in RNA stability

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

A toggle duplex in hepatitis delta virus self-cleaving RNA that stabilizes an inactive and a salt-dependent pro-active ribozyme conformation

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

A quick procedure for purification of functional recombinant proteins over-expressed inE.Coli

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

RNA crystallography

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Presence of a coordinated metal ion in a trans-acting antigenomic delta ribozyme

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Crystal structure at 1.92 A resolution of the RNA-binding domain of the U1A spliceosomal protein complexed with an RNA hairpin

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

RNA folds: insights from recent crystal structures

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Folding of the HDV antigenomic ribozyme pseudoknot structure deduced from long-range photocrosslinks

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Solution structure of a metal-binding site in the major groove of RNA complexed with cobalt (III) hexammine

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Self‐Cleaving Ribozymes of Hepatitis Delta Virus RNA

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

A nested double pseudoknot is required for self-cleavage activity of both the genomic and antigenomic hepatitis delta virus ribozymes

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Improved methods for building protein models in electron density maps and the location of errors in these models

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Crystals by design: a strategy for crystallization of a ribozyme derived from the Tetrahymena group I intron

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

RNAs with dual specificity and dual RNAs with similar specificity

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

[27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

[29] Preparation of selenomethionyl proteins for phase determination

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Why nature chose phosphates

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

A three-dimensional model of hepatitis delta virus ribozyme based on biochemical and mutational analyses

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

A Detailed View of a Ribosomal Active Site

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

1 Use of polyethyleneimine in purification of DNA-binding proteins

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Hepatitis delta virus ribozymes fold to generate a solvent-inaccessible core with essential nucleotides near the cleavage site phosphate

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

On the potential role of the amino nitrogen atom as a hydrogen bond acceptor in macromolecules.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Specificity of ribonucleoprotein interaction determined by RNA folding during complex formulation

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Crystallisation of RNA-protein complexes. II. The application of protein engineering for crystallisation of the U1A protein-RNA complex.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Cross-validated maximum likelihood enhances crystallographic simulated annealing refinement

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

[10] Dynamic light scattering in evaluating crystallizability of macromolecules.

1 reference

9 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

A detailed view of a ribosomal active site: the structure of the L11-RNA complex

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Preparation of selenomethionyl proteins for phase determination

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1006/JMBI.1999.3398

Identifiers

10.1006/JMBI.1999.3398

1 reference

Europe PubMed Central

PubMed publication ID

15 December 2017

http://europepmc.org/abstract/MED/10623545

release_dswbthijwzcnpbbutoclqt7ceu

1 reference

https://api.fatcat.wiki/v0/release/dswbthijwzcnpbbutoclqt7ceu

24 November 2022

based on heuristic

mapped directly with Wikidata item

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

15 December 2017

http://europepmc.org/abstract/MED/10623545

ResearchGate publication ID

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