(Q45789676)

16 December 2017

title

GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies (English)

1 reference

16 December 2017

author name string

Alexey A Gritsenko

1

1 reference

16 December 2017

Jurgen F Nijkamp

2

1 reference

16 December 2017

Marcel J T Reinders

3

1 reference

16 December 2017

Dick de Ridder

4

1 reference

16 December 2017

language of work or name

English

0 references

publication date

6 April 2012

1 reference

16 December 2017

published in

Bioinformatics

1 reference

16 December 2017

volume

28

1 reference

16 December 2017

issue

11

1 reference

16 December 2017

page(s)

1429-1437

1 reference

16 December 2017

Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

BamTools: a C++ API and toolkit for analyzing and managing BAM files

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

Scaffolding pre-assembled contigs using SSPACE

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

SOPRA: Scaffolding algorithm for paired reads via statistical optimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

Fast algorithms for large-scale genome alignment and comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

A linear space algorithm for computing maximal common subsequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

Application of phylogenetic networks in evolutionary studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

Assembly of the working draft of the human genome with GigAssembler

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

Memetic algorithms for the unconstrained binary quadratic programming problem.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

Aggressive assembly of pyrosequencing reads with mates

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

A whole-genome assembly of Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

Hierarchical scaffolding with Bambus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

BEDTools: a flexible suite of utilities for comparing genomic features

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

Fast scaffolding with small independent mixed integer programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTS175

10.1093/BIOINFORMATICS/BTS175

21 January 2018

Identifiers

DOI

1 reference

16 December 2017

journals/bioinformatics/GritsenkoNRR12

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 December 2017