(Q45965126)

18 December 2017

title

Learning regulatory programs that accurately predict differential expression with MEDUSA. (English)

1 reference

18 December 2017

Steve Lianoglou

2

0 references

Marta Arias

Marta Arias

5

0 references

Li Zhang

Li Zhang

7

0 references

Anshul Kundaje

Anshul Kundaje

1

0 references

Christina Leslie

8

Christina Leslie

1 reference

18 December 2017

author name string

Xuejing Li

3

1 reference

18 December 2017

David Quigley

4

1 reference

18 December 2017

Chris H Wiggins

6

1 reference

18 December 2017

language of work or name

English

0 references

publication date

12 October 2007

1 reference

18 December 2017

Annals of the New York Academy of Sciences

published in

1 reference

18 December 2017

volume

1115

1 reference

18 December 2017

page(s)

178-202

1 reference

18 December 2017

A genome-wide screen in Saccharomyces cerevisiae reveals altered transport as a mechanism of resistance to the anticancer drug bleomycin

cites work

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Reverse engineering of regulatory networks in human B cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Predicting gene expression from sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Regulatory element detection using correlation with expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Two novel deduced serine/threonine protein kinases from Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Cluster analysis and display of genome-wide expression patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Reconstructing dynamic regulatory maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Using Bayesian networks to analyze expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Promoting human promoters

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Transcriptional regulatory code of a eukaryotic genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Activation of a membrane-bound transcription factor by regulated ubiquitin/proteasome-dependent processing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

MGA2 is involved in the low-oxygen response element-dependent hypoxic induction of genes in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Mga2p processing by hypoxia and unsaturated fatty acids in Saccharomyces cerevisiae: impact on LORE-dependent gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

A classification-based framework for predicting and analyzing gene regulatory response

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Genomic analyses of anaerobically induced genes in Saccharomyces cerevisiae: functional roles of Rox1 and other factors in mediating the anoxic response.

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Control of ribonucleotide reductase localization through an anchoring mechanism involving Wtm1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

An improved map of conserved regulatory sites for Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Yeast HAP2 and HAP3 activators both bind to the CYC1 upstream activation site, UAS2, in an interdependent manner

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

A checkpoint regulates the rate of progression through S phase in S. cerevisiae in response to DNA damage.

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Identifying regulatory networks by combinatorial analysis of promoter elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Regulation of RAD53 by the ATM-like kinases MEC1 and TEL1 in yeast cell cycle checkpoint pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Identification of a UPC2 homolog in Saccharomyces cerevisiae and its involvement in aerobic sterol uptake

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Systematic determination of genetic network architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Quantitative noise analysis for gene expression microarray experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

DNA-damage induction of RAD54 can be regulated independently of the RAD9- and DDC1-dependent checkpoints that regulate RNR2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Mitotic checkpoint genes in budding yeast and the dependence of mitosis on DNA replication and repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

TRANSFAC: an integrated system for gene expression regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

A systems approach to mapping DNA damage response pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Reverse engineering gene networks using singular value decomposition and robust regression

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

Molecular mechanism of heme signaling in yeast: the transcriptional activator Hap1 serves as the key mediator.

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

DUN1 encodes a protein kinase that controls the DNA damage response in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

A Decision-Theoretic Generalization of On-Line Learning and an Application to Boosting

21 January 2018

1 reference

https://api.crossref.org/works/10.1196%2FANNALS.1407.020

21 January 2018

Identifiers

DOI

10.1196/ANNALS.1407.020

1 reference

18 December 2017

1 reference

18 December 2017