(Q46099507)

19 December 2017

title

Numerical methods for a Poisson-Nernst-Planck-Fermi model of biological ion channels (English)

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19 December 2017

author name string

Jinn-Liang Liu

series ordinal

1

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19 December 2017

Bob Eisenberg

series ordinal

2

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19 December 2017

language of work or name

English

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publication date

14 July 2015

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19 December 2017

published in

Physical Review E

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19 December 2017

volume

92

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19 December 2017

issue

1

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19 December 2017

page(s)

012711

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19 December 2017

Analysis and Simulation of Semiconductor Devices

cites work

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

A lattice relaxation algorithm for three-dimensional Poisson-Nernst-Planck theory with application to ion transport through the gramicidin A channel.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Three-dimensional Poisson-Nernst-Planck theory studies: influence of membrane electrostatics on gramicidin A channel conductance

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Poisson-Nernst-Planck Equations for Simulating Biomolecular Diffusion-Reaction Processes I: Finite Element Solutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Soft Wall Ion Channel in Continuum Representation with Application to Modeling Ion Currents in α-Hemolysin

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Second-order Poisson Nernst-Planck solver for ion channel transport

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Molecular dynamics simulations of biomolecules: long-range electrostatic effects

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Molecular dynamics estimates of ion diffusion in model hydrophobic and KcsA potassium channels.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Tests of continuum theories as models of ion channels. II. Poisson-Nernst-Planck theory versus brownian dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

What are the dielectric "constants" of proteins and how to validate electrostatic models?

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Ion permeation and selectivity of OmpF porin: a theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Recent advances in ion channel research

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Continuum electrostatics fails to describe ion permeation in the gramicidin channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Permeation in ion channels: the interplay of structure and theory

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Testing the applicability of Nernst-Planck theory in ion channels: comparisons with Brownian dynamics simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

The Poisson-Boltzmann equation for biomolecular electrostatics: a tool for structural biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Poisson-Nernst-Planck theory approach to the calculation of current through biological ion channels.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Multiple Scales in the Simulation of Ion Channels and Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Variational multiscale models for charge transport.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Interacting ions in biophysics: real is not ideal

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Poisson-Nernst-Planck-Fermi theory for modeling biological ion channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Treatment of charge singularities in implicit solvent models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Permeation and selectivity in calcium channels.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Constant fields and constant gradients in open ionic channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Application of the Poisson-Nernst-Planck theory with space-dependent diffusion coefficients to KcsA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Energetics of divalent selectivity in a calcium channel: the ryanodine receptor case study

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Ionic selectivity in L-type calcium channels by electrostatics and hard-core repulsion

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Environment and exposure to solvent of protein atoms. Lysozyme and insulin

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Dielectric boundary force and its crucial role in gramicidin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Steric selectivity in Na channels arising from protein polarization and mobile side chains.

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Modeling of the outer vestibule and selectivity filter of the L-type Ca2+ channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Analytical models of calcium binding in a calcium channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Non-selective conductance in calcium channels of frog muscle: calcium selectivity in a single-file pore

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Structural insight into the ion-exchange mechanism of the sodium/calcium exchanger

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

The Structure of the Potassium Channel: Molecular Basis of K+ Conduction and Selectivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Structure of the TRPV1 ion channel determined by electron cryo-microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Structural basis for Ca2+ selectivity of a voltage-gated calcium channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Noncontact dipole effects on channel permeation. VI. 5F- and 6F-Trp gramicidin channel currents

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

The role of the dielectric barrier in narrow biological channels: a novel composite approach to modeling single-channel currents

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Dynamic properties of Na+ ions in models of ion channels: a molecular dynamics study

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Molecular surface-free continuum model for electrodiffusion processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Ion transport in the gramicidin channel: molecular dynamics study of single and double occupancy

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Computational studies of the gramicidin channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Energetics of ion permeation, rejection, binding, and block in gramicidin A from free energy simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Two-Dimensional Exponential Fitting and Applications to Drift-Diffusion Models

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

Monte Carlo simulations of ion selectivity in a biological Na channel: Charge–space competition

21 January 2018

1 reference

https://api.crossref.org/works/10.1103%2FPHYSREVE.92.012711

10.1103/PHYSREVE.92.012711

21 January 2018

Identifiers

DOI

1 reference

19 December 2017

release_rb4pkphlprbb7pe2lmiq2botwm

ADS bibcode

2015PhRvE..92a2711L

0 references

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/rb4pkphlprbb7pe2lmiq2botwm

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

19 December 2017