(Q46199212)

20 December 2017

title

Reconstruction and analysis of the genome-scale metabolic network of Candida glabrata (English)

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20 December 2017

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Nan Xu

1

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20 December 2017

Liming Liu

2

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20 December 2017

Wei Zou

3

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20 December 2017

Jie Liu

4

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20 December 2017

Qiang Hua

5

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20 December 2017

Jian Chen

6

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20 December 2017

publication date

22 November 2012

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20 December 2017

published in

Molecular BioSystems

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20 December 2017

volume

9

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20 December 2017

issue

2

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20 December 2017

page(s)

205-216

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20 December 2017

Engineering Escherichia coli for efficient conversion of glucose to pyruvate

cites work

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Significant increase of glycolytic flux in Torulopsis glabrata by inhibition of oxidative phosphorylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Redirection of the NADH oxidation pathway in Torulopsis glabrata leads to an enhanced pyruvate production

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Increasing glycolytic flux in Torulopsis glabrata by redirecting ATP production from oxidative phosphorylation to substrate-level phosphorylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Enhancement of pyruvate production by Torulopsis glabrata using a two-stage oxygen supply control strategy

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Enhancement of pyruvate productivity by inducible expression of a F(0)F(1)-ATPase inhibitor INH1 in Torulopsis glabrata CCTCC M202019.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Enhancement of pyruvate production by osmotic-tolerant mutant of Torulopsis glabrata.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Industrial systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

A protocol for generating a high-quality genome-scale metabolic reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Applications of genome-scale metabolic reconstructions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

A yeast by any other name: Candida glabrata and its interaction with the host

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Genome-scale models of microbial cells: evaluating the consequences of constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

KAAS: an automatic genome annotation and pathway reconstruction server

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Optimization based automated curation of metabolic reconstructions

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Prediction of protein subcellular localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

WoLF PSORT: protein localization predictor

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

TransportDB: a relational database of cellular membrane transport systems

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

TCDB: the Transporter Classification Database for membrane transport protein analyses and information

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

ChEBI: a database and ontology for chemical entities of biological interest

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

PubChem: Integrated Platform of Small Molecules and Biological Activities

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Manipulating the pyruvate dehydrogenase bypass of a multi-vitamin auxotrophic yeast Torulopsis glabrata enhanced pyruvate production

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Redistribution of carbon flux in Torulopsis glabrata by altering vitamin and calcium level.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Genome evolution in yeasts

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Functional characterization of the CgPGS1 gene reveals a link between mitochondrial phospholipid homeostasis and drug resistance in Candida glabrata

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

The cell wall of the human pathogen Candida glabrata: differential incorporation of novel adhesin-like wall proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

What is flux balance analysis?

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Computationally efficient flux variability analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

In silico identification of gene amplification targets for improvement of lycopene production

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Identification of a Candida glabrata homologue of the S. cerevisiae VRG4 gene, encoding the Golgi GDP-mannose transporter

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Connecting extracellular metabolomic measurements to intracellular flux states in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Metabolic flux analysis for efficient pyruvate fermentation using vitamin-auxotrophic yeast of Torulopsis glabrata.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Epidemiology of invasive candidiasis: a persistent public health problem

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Biology of the pathogenic yeast Candida glabrata

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Phenotypic switching and filamentation in Candida glabrata.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Phenotypic switching and mating type switching of Candida glabrata at sites of colonization

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Dark brown is the more virulent of the switch phenotypes of Candida glabrata

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Candida glabrata environmental stress response involves Saccharomyces cerevisiae Msn2/4 orthologous transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

The high-osmolarity glycerol response pathway in the human fungal pathogen Candida glabrata strain ATCC 2001 lacks a signaling branch that operates in baker's yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

A family of glycosylphosphatidylinositol-linked aspartyl proteases is required for virulence of Candida glabrata

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Azole resistance in Candida glabrata: coordinate upregulation of multidrug transporters and evidence for a Pdr1-like transcription factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Contribution of CgPDR1-regulated genes in enhanced virulence of azole-resistant Candida glabrata

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Autophagy supports Candida glabrata survival during phagocytosis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Mechanisms of resistance to azole antifungal agents in Candida albicans isolates from AIDS patients involve specific multidrug transporters

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

In vitro and in vivo effects of 14alpha-demethylase (ERG11) depletion in Candida glabrata

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Genome-scale metabolic reconstruction and in silico analysis of methylotrophic yeast Pichia pastoris for strain improvement

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Mining the literature and large datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Pentose-phosphate pathway in Saccharomyces cerevisiae: analysis of deletion mutants for transketolase, transaldolase, and glucose 6-phosphate dehydrogenase

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Systems metabolic engineering of microorganisms for natural and non-natural chemicals

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Cryptococcus and beyond--inositol utilization and its implications for the emergence of fungal virulence

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Intestinal resident yeast Candida glabrata requires Cyb2p-mediated lactate assimilation to adapt in mouse intestine

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Functional genomic analysis of Candida glabrata-macrophage interaction: role of chromatin remodeling in virulence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Phenotypic and molecular characterization of Candida nivariensis sp. nov., a possible new opportunistic fungus

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Candida albicans and Candida glabrata clinical isolates exhibiting reduced echinocandin susceptibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Effect of Candida glabrata FKS1 and FKS2 mutations on echinocandin sensitivity and kinetics of 1,3-beta-D-glucan synthase: implication for the existing susceptibility breakpoint

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Probing the Active Site ofCandida glabrataDihydrofolate Reductase with High Resolution Crystal Structures and the Synthesis of New Inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Deletion of the Candida glabrata ERG3 and ERG11 genes: effect on cell viability, cell growth, sterol composition, and antifungal susceptibility

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Depletion of the squalene synthase (ERG9) gene does not impair growth of Candida glabrata in mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Reduced susceptibility to polyenes associated with a missense mutation in the ERG6 gene in a clinical isolate of Candida glabrata with pseudohyphal growth

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Candida glabrata erg1 mutant with increased sensitivity to azoles and to low oxygen tension

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

Candida glabrata tryptophan-based pigment production via the Ehrlich pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1039%2FC2MB25311A

21 January 2018

Identifiers

DOI

10.1039/C2MB25311A

1 reference

20 December 2017

1 reference

20 December 2017