(Q46288430)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

title

Dynamic landscape and regulation of RNA editing in mammals (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Meng How Tan

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Jennefer N Kohler

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Kentaro Ariyoshi

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Avinash Ramu

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Mary A O'Connell

43

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Rui Zhang

8

0 references

Liam Keegan

object named as

Liam P Keegan

12

0 references

author name string

Qin Li

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Raghuvaran Shanmugam

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Robert Piskol

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Amy N Young

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Kaiwen Ivy Liu

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Gokul Ramaswami

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Ankita Gupte

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Cyril X George

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Ni Huang

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Elizabeth A Pollina

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Dena S Leeman

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Alessandra Rustighi

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Y P Sharon Goh

19

1 reference

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7 April 2020

GTEx Consortium

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Laboratory, Data Analysis &Coordinating Center (LDACC)—Analysis Working Group

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Statistical Methods groups—Analysis Working Group

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Enhancing GTEx (eGTEx) groups

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

NIH Common Fund

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

NIH/NCI

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

NIH/NHGRI

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

NIH/NIMH

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

NIH/NIDA

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Biospecimen Collection Source Site—NDRI

29

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Biospecimen Collection Source Site—RPCI

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Biospecimen Core Resource—VARI

31

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Brain Bank Repository—University of Miami Brain Endowment Bank

32

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Leidos Biomedical—Project Management

33

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

ELSI Study

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1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Genome Browser Data Integration &Visualization—EBI

35

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Genome Browser Data Integration &Visualization—UCSC Genomics Institute, University of California Santa Cruz

36

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Ajay Chawla

37

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Giannino Del Sal

38

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Gary Peltz

39

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Anne Brunet

40

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Donald F Conrad

41

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Charles E Samuel

42

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Kazuko Nishikura

45

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

Jin Billy Li

46

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

language of work or name

English

0 references

publication date

1 October 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

volume

550

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

issue

7675

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

page(s)

249-254

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

7 April 2020

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5723435/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/nature24041

0 references

cites work

Dynamic regulation of RNA editing in human brain development and disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Identification of human RNA editing sites: A historical perspective

24 May 2018

1 reference

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RNA Editing: A Contributor to Neuronal Dynamics in the Mammalian Brain.

24 May 2018

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Profiling RNA editing in human tissues: towards the inosinome Atlas

24 May 2018

1 reference

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Genetic mapping uncovers cis-regulatory landscape of RNA editing

24 May 2018

1 reference

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RNA editing by ADAR1 prevents MDA5 sensing of endogenous dsRNA as nonself

24 May 2018

1 reference

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Cis regulatory effects on A-to-I RNA editing in related Drosophila species

24 May 2018

1 reference

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Genome sequence-independent identification of RNA editing sites

24 May 2018

1 reference

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Alu elements shape the primate transcriptome by cis-regulation of RNA editing

24 May 2018

1 reference

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ADAR1 deaminase contributes to scheduled skeletal myogenesis progression via stage-specific functions.

24 May 2018

1 reference

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Mammalian conserved ADAR targets comprise only a small fragment of the human editosome

24 May 2018

1 reference

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Quantifying RNA allelic ratios by microfluidic multiplex PCR and sequencing.

24 May 2018

1 reference

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Deciphering the functions and regulation of brain-enriched A-to-I RNA editing

24 May 2018

1 reference

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RADAR: a rigorously annotated database of A-to-I RNA editing

24 May 2018

1 reference

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Spatio-temporal profiling of Filamin A RNA-editing reveals ADAR preferences and high editing levels outside neuronal tissues

24 May 2018

1 reference

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Drift and conservation of differential exon usage across tissues in primate species

24 May 2018

1 reference

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

24 May 2018

1 reference

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A high-throughput screen to identify enhancers of ADAR-mediated RNA-editing

24 May 2018

1 reference

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Identifying RNA editing sites using RNA sequencing data alone

24 May 2018

1 reference

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RNA-interacting proteins act as site-specific repressors of ADAR2-mediated RNA editing and fluctuate upon neuronal stimulation

24 May 2018

1 reference

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Evolutionary dynamics of gene and isoform regulation in Mammalian tissues.

24 May 2018

1 reference

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The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics

24 May 2018

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RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development

24 May 2018

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A-to-I RNA editing: effects on proteins key to neural excitability

24 May 2018

1 reference

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High levels of RNA-editing site conservation amongst 15 laboratory mouse strains

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Accurate identification of human Alu and non-Alu RNA editing sites

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Comprehensive analysis of RNA-Seq data reveals extensive RNA editing in a human transcriptome

24 May 2018

1 reference

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24 May 2018

ViennaRNA Package 2.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

MissForest--non-parametric missing value imputation for mixed-type data.

24 May 2018

1 reference

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Modulation of dADAR-dependent RNA editing by the Drosophila fragile X mental retardation protein.

24 May 2018

1 reference

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Accurate identification of A-to-I RNA editing in human by transcriptome sequencing

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Sequence-based characterization of structural variation in the mouse genome

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Mouse genomic variation and its effect on phenotypes and gene regulation

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Pin1 and WWP2 regulate GluR2 Q/R site RNA editing by ADAR2 with opposing effects

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Functions and regulation of RNA editing by ADAR deaminases

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Fast and accurate long-read alignment with Burrows-Wheeler transform

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

The Sequence Alignment/Map format and SAMtools

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Large-scale mRNA sequencing determines global regulation of RNA editing during brain development.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

WGCNA: an R package for weighted correlation network analysis

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

ROKU: a novel method for identification of tissue-specific genes

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Liver Disintegration in the Mouse Embryo Caused by Deficiency in the RNA-editing Enzyme ADAR1

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Downregulation of FUSE-binding protein and c-myc by tRNA synthetase cofactor p38 is required for lung cell differentiation

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

BLAT—The BLAST-Like Alignment Tool

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Adenosine Deaminase That Acts on RNA 3 (ADAR3) Binding to Glutamate Receptor Subunit B Pre-mRNA Inhibits RNA Editing in Glioblastoma.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

Adenosine-to-inosine RNA editing controls cathepsin S expression in atherosclerosis by enabling HuR-mediated post-transcriptional regulation.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

The evolutionary landscape of alternative splicing in vertebrate species

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5723435

3 November 2018

Identifiers

DOI

10.1038/NATURE24041

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29022589%20AND%20SRC:MED&resulttype=core&format=json

7 April 2020

PubMed publication ID

29022589

1 reference