(Q46345411)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28645144%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

title

Increased alignment sensitivity improves the usage of genome alignments for comparative gene annotation (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28645144%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28645144%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

author name string

Michael Hiller

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28645144%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

language of work or name

English

0 references

publication date

1 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28645144%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28645144%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

volume

45

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28645144%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

issue

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28645144%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

page(s)

8369-8377

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28645144%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 4.0 International

23 March 2020

copyright license

start time

21 June 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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24 May 2018

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Coding exon-structure aware realigner (CESAR) utilizes genome alignments for accurate comparative gene annotation

24 May 2018

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24 May 2018

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The UCSC Genome Browser database: 2016 update

24 May 2018

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24 May 2018

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24 May 2018

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24 May 2018

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Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes

24 May 2018

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24 May 2018

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24 May 2018

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24 May 2018

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24 May 2018

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Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

24 May 2018

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Comparative genomics search for losses of long-established genes on the human lineage

24 May 2018

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MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes

24 May 2018

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Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

24 May 2018

1 reference

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Reconstructing contiguous regions of an ancestral genome

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737078

Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources

24 May 2018

1 reference

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737078

Distribution and intensity of constraint in mammalian genomic sequence

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737078

A model of the statistical power of comparative genome sequence analysis

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737078

Reconstructing large regions of an ancestral mammalian genome in silico

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737078

24 May 2018

GeneWise and Genomewise

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The Ensembl automatic gene annotation system

24 May 2018

1 reference

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Aligning multiple genomic sequences with the threaded blockset aligner

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737078

Gene prediction with a hidden Markov model and a new intron submodel

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737078

Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737078

24 May 2018

1 reference

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Prediction of complete gene structures in human genomic DNA

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737078

Direct mapping and alignment of protein sequences onto genomic sequence.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737078

Using native and syntenically mapped cDNA alignments to improve de novo gene finding.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737078

Using multiple alignments to improve gene prediction.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5737078

15 August 2018

Identifiers

DOI

10.1093/NAR/GKX554

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28645144%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28645144%20AND%20SRC:MED&resulttype=core&format=json

23 March 2020

PubMed publication ID

28645144

1 reference