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Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms.
scientific article published on 7 January 2016
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Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
title
Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms
(English)
1 reference
stated in
Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
main subject
angiosperms
0 references
Angiospermae
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inferred from title
author
Steven Maere
series ordinal
4
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Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
Jonas Defoort
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2
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Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
Setareh Tasdighian
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3
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Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
author name string
Zhen Li
series ordinal
1
1 reference
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Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
Yves Van de Peer
series ordinal
5
1 reference
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Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
Riet De Smet
series ordinal
6
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Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
publication date
7 January 2016
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Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
published in
The Plant Cell
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Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
volume
28
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Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
issue
2
1 reference
stated in
Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
page(s)
326-344
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Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
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29 September 2018
Genome sequence of the palaeopolyploid soybean
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
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29 September 2018
PlnTFDB: updated content and new features of the plant transcription factor database
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
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29 September 2018
The flowering world: a tale of duplications
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
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29 September 2018
Estimates of the effect of natural selection on protein-coding content
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
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29 September 2018
Gene and genome duplications: the impact of dosage-sensitivity on the fate of nuclear genes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
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29 September 2018
The evolutionary significance of ancient genome duplications
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
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29 September 2018
Bias in plant gene content following different sorts of duplication: tandem, whole-genome, segmental, or by transposition
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
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29 September 2018
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
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29 September 2018
The complex relationship of gene duplication and essentiality.
1 reference
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
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29 September 2018
The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
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29 September 2018
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Unique genes in plants: specificities and conserved features throughout evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Many or most genes in Arabidopsis transposed after the origin of the order Brassicales
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Rates of molecular evolution are linked to life history in flowering plants
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Evolution of a new function by degenerative mutation in cephalochordate steroid receptors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Multiple paleopolyploidizations during the evolution of the Compositae reveal parallel patterns of duplicate gene retention after millions of years
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Low duplicability and network fragility of cancer genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Pervasive and persistent redundancy among duplicated genes in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
The DNA replication checkpoint aids survival of plants deficient in the novel replisome factor ETG1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Protein under-wrapping causes dosage sensitivity and decreases gene duplicability
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Natural history and evolutionary principles of gene duplication in fungi
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
PAML 4: phylogenetic analysis by maximum likelihood
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
The gene balance hypothesis: from classical genetics to modern genomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Many gene and domain families have convergent fates following independent whole-genome duplication events in Arabidopsis, Oryza, Saccharomyces and Tetraodon
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Aneuploidy and isochromosome formation in drug-resistant Candida albicans
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Gene loss and evolutionary rates following whole-genome duplication in teleost fishes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Estimating the tempo and mode of gene family evolution from comparative genomic data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Using reconfigurable hardware to accelerate multiple sequence alignment with ClustalW.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Modeling gene and genome duplications in eukaryotes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Dosage balance in gene regulation: biological implications
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Biological robustness
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
The altered evolutionary trajectories of gene duplicates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
MUSCLE: multiple sequence alignment with high accuracy and high throughput
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Preferential duplication of conserved proteins in eukaryotic genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Scaling laws in the functional content of genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Dosage sensitivity and the evolution of gene families in yeast
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
The evolutionary demography of duplicate genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
An approximately unbiased test of phylogenetic tree selection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
The evolutionary fate and consequences of duplicate genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
PAML: a program package for phylogenetic analysis by maximum likelihood
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
A codon-based model of nucleotide substitution for protein-coding DNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
29 September 2018
Scaling laws in functional genome content across prokaryotic clades and lifestyles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4790876
retrieved
1 December 2018
Higher duplicability of less important genes in yeast genomes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26744215
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1105/TPC.15.00877
1 reference
stated in
Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
PMC publication ID
4790876
0 references
PubMed publication ID
26744215
1 reference
stated in
Europe PubMed Central
PubMed publication ID
26744215
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26744215%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 March 2020
ResearchGate publication ID
290183394
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