(Q46645138)

23 December 2017

title

Validation of Structures in the Protein Data Bank (English)

1 reference

23 December 2017

0 references

1

1 reference

23 December 2017

Aleksandras Gutmanas

4

1 reference

23 December 2017

Sameer Velankar

33

1 reference

23 December 2017

John Westbrook

5

John D Westbrook

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Lora Mak

Lora Mak

15

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Ezra Peisach

Ezra Peisach

19

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John M Berrisford

John M Berrisford

9

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Ardan Patwardhan

Ardan Patwardhan

18

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Abhik Mukhopadhyay

Abhik Mukhopadhyay

16

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Oliver Smart

Oliver S Smart

24

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Catherine L. Lawson

Catherine L Lawson

13

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Gerard Kleywegt

Gerard J Kleywegt

34

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Jasmine Young

Jasmine Y Young

28

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Helen M. Berman

31

Helen M Berman

1 reference

23 December 2017

7

Zukang Feng

1 reference

23 December 2017

11

Yasuyo Ikegawa

1 reference

23 December 2017

6

Huanwang Yang

1 reference

23 December 2017

30

John L Markley

1 reference

23 December 2017

23

Chenghua Shao

1 reference

23 December 2017

29

Haruki Nakamura

1 reference

23 December 2017

22

Sanchayita Sen

1 reference

23 December 2017

12

Naohiro Kobayashi

1 reference

23 December 2017

25

Eldon L Ulrich

1 reference

23 December 2017

Martha Quesada

27

Martha Quesada

1 reference

23 December 2017

Monica R. Sekharan

21

Monica R Sekharan

1 reference

23 December 2017

Eduardo Sanz-García

2

Eduardo Sanz García

1 reference

23 December 2017

Pieter M.S. Hendrickx

3

Pieter M S Hendrickx

1 reference

23 December 2017

Kumaran Baskaran

8

Kumaran Baskaran

1 reference

23 December 2017

Stephen K Burley

32

Stephen K Burley

1 reference

23 December 2017

Reiko Yamashita

26

Reiko Yamashita

1 reference

23 December 2017

20

Gaurav Sahni

1 reference

23 December 2017

Brian P Hudson

10

1 reference

23 December 2017

Steve Mading

14

1 reference

23 December 2017

Thomas J Oldfield

17

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23 December 2017

language of work or name

English

0 references

publication date

21 November 2017

1 reference

23 December 2017

published in

Structure

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23 December 2017

volume

25

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23 December 2017

page(s)

1916-1927

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23 December 2017

issue

12

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23 December 2017

Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

A public database of macromolecular diffraction experiments

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Protein Data Bank Japan (PDBj): updated user interfaces, resource description framework, analysis tools for large structures

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

DCC: a Swiss army knife for structure factor analysis and validation

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

EMPIAR: a public archive for raw electron microscopy image data.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

The Cambridge Structural Database

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Data publication with the structural biology data grid supports live analysis

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

EMDataBank unified data resource for 3DEM.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

PDBe: improved accessibility of macromolecular structure data from PDB and EMDB

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

NMR Exchange Format: a unified and open standard for representation of NMR restraint data

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

The PDB_REDO server for macromolecular structure model optimization

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Web-based visualisation and analysis of 3D electron-microscopy data from EMDB and PDB.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Recommendations of the wwPDB NMR Validation Task Force

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Implementing an X-ray validation pipeline for the Protein Data Bank

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Outcome of the first electron microscopy validation task force meeting

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

A new generation of crystallographic validation tools for the protein data bank

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Objective identification of residue ranges for the superposition of protein structures

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Overview of the CCP4 suite and current developments

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

A probabilistic approach for validating protein NMR chemical shift assignments

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Features and development of Coot

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

PHENIX: a comprehensive Python-based system for macromolecular structure solution

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

MolProbity: all-atom structure validation for macromolecular crystallography

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Crystallographic analysis of calcium-dependent heparin binding to annexin A2.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

A simple method to predict protein flexibility using secondary chemical shifts

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

The Uppsala Electron-Density Server

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Retrieval of crystallographically-derived molecular geometry information.

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Refinement of macromolecular structures by the maximum-likelihood method

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Announcing the worldwide Protein Data Bank

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Stereochemistry of polypeptide chain configurations

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Homo crystallographicus--quo vadis?

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

24 May 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Where freedom is given, liberties are taken

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Improved methods for building protein models in electron density maps and the location of errors in these models

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

The Coherent X-ray Imaging Data Bank

24 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

New parameters for the refinement of nucleic acid-containing structures.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

A statistic for local intensity differences: robustness to anisotropy and pseudo-centering and utility for detecting twinning.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

Data Deposition and Annotation at the Worldwide Protein Data Bank

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5718880

1 December 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/29174494

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.STR.2017.10.009

1 reference

23 December 2017

release_jsbqsnsyjbbnrczovna264rlse

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/jsbqsnsyjbbnrczovna264rlse

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

5718880

1 reference

23 December 2017

PubMed ID

29174494

1 reference

23 December 2017