(Q46754388)

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Monitoring structural changes in nucleic acids with single residue spatial and millisecond time resolution by quantitative hydroxyl radical footprinting

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Europe PubMed Central

PubMed publication ID

24 December 2017

http://europepmc.org/abstract/MED/18274531

Monitoring structural changes in nucleic acids with single residue spatial and millisecond time resolution by quantitative hydroxyl radical footprinting (English)

1 reference

Europe PubMed Central

PubMed publication ID

24 December 2017

http://europepmc.org/abstract/MED/18274531

author name string

Inna Shcherbakova

1

1 reference

Europe PubMed Central

PubMed publication ID

24 December 2017

http://europepmc.org/abstract/MED/18274531

Michael Brenowitz

2

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Europe PubMed Central

PubMed publication ID

24 December 2017

http://europepmc.org/abstract/MED/18274531

publication date

1 January 2008

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Europe PubMed Central

PubMed publication ID

24 December 2017

http://europepmc.org/abstract/MED/18274531

Nature Protocols

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Europe PubMed Central

PubMed publication ID

24 December 2017

http://europepmc.org/abstract/MED/18274531

3

1 reference

Europe PubMed Central

PubMed publication ID

24 December 2017

http://europepmc.org/abstract/MED/18274531

2

1 reference

Europe PubMed Central

PubMed publication ID

24 December 2017

http://europepmc.org/abstract/MED/18274531

288-302

1 reference

Europe PubMed Central

PubMed publication ID

24 December 2017

http://europepmc.org/abstract/MED/18274531

DNAase footprinting a simple method for the detection of protein-DNA binding specificity

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Defining the inside and outside of a catalytic RNA molecule

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Quantitative nucleic acids footprinting: thermodynamic and kinetic approaches

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Hydroxyl radical "footprinting": high-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Quantitative kinetics footprinting of protein-DNA association reactions

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

LXXIII.—Oxidation of tartaric acid in presence of iron

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Fast Fenton footprinting: a laboratory-based method for the time-resolved analysis of DNA, RNA and proteins

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Iron(II) EDTA used to measure the helical twist along any DNA molecule

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

[22] Time-resolved synchrotron X-ray footprinting and its application to RNA folding

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Probing the structural dynamics of nucleic acids by quantitative time-resolved and equilibrium hydroxyl radical "footprinting".

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Nanosecond laser-induced photochemical oxidation method for protein surface mapping with mass spectrometry

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Laser flash photolysis of hydrogen peroxide to oxidize protein solvent-accessible residues on the microsecond timescale.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Determinants of RNA polymerase alpha subunit for interaction with beta, beta', and sigma subunits: hydroxyl-radical protein footprinting

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Protein surface mapping by chemical oxidation: structural analysis by mass spectrometry

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Radiolytic protein footprinting with mass spectrometry to probe the structure of macromolecular complexes.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme: enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

A simple method for 3'-labeling of RNA.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Custom fluorescent-nucleotide synthesis as an alternative method for nucleic acid labeling

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Following the dynamics of changes in solvent accessibility of 16 S and 23 S rRNA during ribosomal subunit association using synchrotron-generated hydroxyl radicals

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Protein-independent Folding Pathway of the 16S rRNA 5′ Domain

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Quantitative DNase footprint titration: a method for studying protein-DNA interactions

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

[19] Following the folding of RNA with time-resolved synchrotron X-ray footprinting

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Analysis of protein solvent accessible surfaces by photochemical oxidation and mass spectrometry

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

DMS footprinting of structured RNAs and RNA-protein complexes

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2007.533

31 March 2020

Identifiers

10.1038/NPROT.2007.533

1 reference

Europe PubMed Central

PubMed publication ID

24 December 2017

http://europepmc.org/abstract/MED/18274531

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

24 December 2017

http://europepmc.org/abstract/MED/18274531

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