(Q35758464)

10 August 2017

Distinct contribution of electrostatics, initial conformational ensemble, and macromolecular stability in RNA folding (English)

1 reference

10 August 2017

1 reference

Alain Laederach

1

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Russ Altman

series ordinal

4

object named as

Russ B Altman

1 reference

10 August 2017

Inna Shcherbakova

2

1 reference

10 August 2017

Magdalena A Jonikas

series ordinal

3

1 reference

10 August 2017

Michael Brenowitz

series ordinal

5

1 reference

10 August 2017

language of work or name

English

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publication date

16 April 2007

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Proceedings of the National Academy of Sciences of the United States of America

10 August 2017

1 reference

10 August 2017

104

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10 August 2017

7045-7050

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10 August 2017

17

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Fast Fenton footprinting: a laboratory-based method for the time-resolved analysis of DNA, RNA and proteins

10 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

An obligate intermediate along the slow folding pathway of a group II intron ribozyme

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Time-resolved infrared spectroscopy of RNA folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Single-molecule RNA folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

RNA and protein folding: common themes and variations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Strategies for RNA folding and assembly

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Probing the structural dynamics of nucleic acids by quantitative time-resolved and equilibrium hydroxyl radical "footprinting".

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

The rate-limiting step in the folding of a large ribozyme without kinetic traps

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Rapid compaction during RNA folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Exploring the folding landscape of a structured RNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Concerted kinetic folding of a multidomain ribozyme with a disrupted loop-receptor interaction

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Multiple folding pathways for the P4-P6 RNA domain

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

An optimal Mg(2+) concentration for kinetic folding of the tetrahymena ribozyme

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Chemical physics of protein folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

A simple method for 3'-labeling of RNA.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

VMD: visual molecular dynamics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Kinetics and thermodynamics of folding in model proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Funnels, pathways, and the energy landscape of protein folding: a synthesis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Sequence-specific endoribonuclease activity of the Tetrahymena ribozyme: enhanced cleavage of certain oligonucleotide substrates that form mismatched ribozyme-substrate complexes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Translational control by delayed RNA folding: identification of the kinetic trap.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Small angle X-ray scattering reveals a compact intermediate in RNA folding

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1855354

Mg2+-induced tRNA folding

12 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0608765104

Perturbed folding kinetics of circularly permuted RNAs with altered topology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0608765104

Does native state topology determine the RNA folding mechanism?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0608765104

Cooperativity, smooth energy landscapes and the origins of topology-dependent protein folding rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0608765104

Perturbation of the hierarchical folding of a large RNA by the destabilization of its Scaffold's tertiary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0608765104

Monovalent cations mediate formation of native tertiary structure of the Tetrahymena thermophila ribozyme.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0608765104

Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0608765104

The Fastest Global Events in RNA Folding: Electrostatic Relaxation and Tertiary Collapse of the Tetrahymena Ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0608765104

Folding of RNA involves parallel pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0608765104

[19] Following the folding of RNA with time-resolved synchrotron X-ray footprinting

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0608765104

Multiple Monovalent Ion-dependent Pathways for the Folding of the L-21 Tetrahymena thermophila Ribozyme

21 January 2018

1 reference

12 December 2020

Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding

1 reference

12 December 2020

Kinetic analysis of the M1 RNA folding pathway

1 reference

12 December 2020

RNA folding pathway functional intermediates: their prediction and analysis

1 reference

12 December 2020

Reduced contact order and RNA folding rates

1 reference

12 December 2020

Kinetic intermediates in RNA folding

1 reference

12 December 2020

Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity

1 reference

12 December 2020

Kinetic intermediates trapped by native interactions in RNA folding

1 reference

12 December 2020

Fast folding mutants of the Tetrahymena group I ribozyme reveal a rugged folding energy landscape

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0608765104

1 reference

10 August 2017

0 references

1 reference

10 August 2017

1 reference