(Q46923347)

26 December 2017

title

Histone modifications and expression of light-regulated genes in Arabidopsis are cooperatively influenced by changing light conditions (English)

1 reference

26 December 2017

author name string

Lan Guo

1

1 reference

26 December 2017

Junli Zhou

2

1 reference

26 December 2017

Axel A Elling

3

1 reference

26 December 2017

Jean-Benoit F Charron

4

1 reference

26 December 2017

Xing Wang Deng

5

1 reference

26 December 2017

language of work or name

English

0 references

publication date

11 June 2008

1 reference

26 December 2017

number of pages

14

1 reference

inferred from page(s)

published in

Plant Physiology

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26 December 2017

volume

147

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26 December 2017

issue

4

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26 December 2017

page(s)

2070-2083

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26 December 2017

Creative Commons Attribution 4.0 International

copyright license

start time

25 January 2021

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development.

26 August 2018

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Histone methylation-dependent mechanisms impose ligand dependency for gene activation by nuclear receptors

26 August 2018

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26 August 2018

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26 August 2018

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Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II

26 August 2018

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26 August 2018

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Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis.

26 August 2018

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Arabidopsis HAF2 gene encoding TATA-binding protein (TBP)-associated factor TAF1, is required to integrate light signals to regulate gene expression and growth.

26 August 2018

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26 August 2018

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Arabidopsis COP10 forms a complex with DDB1 and DET1 in vivo and enhances the activity of ubiquitin conjugating enzymes

26 August 2018

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26 August 2018

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26 August 2018

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26 August 2018

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Vernalization requires epigenetic silencing of FLC by histone methylation

26 August 2018

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The COP1-SPA1 interaction defines a critical step in phytochrome A-mediated regulation of HY5 activity

26 August 2018

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Genetic Control of Developmental Changes Induced by Disruption of Arabidopsis Histone Deacetylase 1 (AtHD1) Expression

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

The transcriptional enhancer of the pea plastocyanin gene associates with the nuclear matrix and regulates gene expression through histone acetylation

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Analysis of the mutational effects of the COP/DET/FUS loci on genome expression profiles reveals their overlapping yet not identical roles in regulating Arabidopsis seedling development

26 August 2018

1 reference

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Chromatin regulation of plant development.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Analysis of far-red light-regulated genome expression profiles of phytochrome A pathway mutants in Arabidopsis.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

The hy3 Long Hypocotyl Mutant of Arabidopsis Is Deficient in Phytochrome B.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

De-etiolated 1 and damaged DNA binding protein 1 interact to regulate Arabidopsis photomorphogenesis

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Genome-wide binding map of the histone deacetylase Rpd3 in yeast

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in Arabidopsis

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Light control of Arabidopsis development entails coordinated regulation of genome expression and cellular pathways.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Binding of c-Myc to chromatin mediates mitogen-induced acetylation of histone H4 and gene activation.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Translating the Histone Code

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Blocking histone deacetylation in Arabidopsis induces pleiotropic effects on plant gene regulation and development

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Functional analysis of a RPD3 histone deacetylase homologue in Arabidopsis thaliana.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Ordered recruitment of chromatin modifying and general transcription factors to the IFN-beta promoter

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Genomewide studies of histone deacetylase function in yeast

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Targeted destabilization of HY5 during light-regulated development of Arabidopsis.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Structural organization and interactions of COP1, a light-regulated developmental switch

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Antagonistic actions of Arabidopsis cryptochromes and phytochrome B in the regulation of floral induction

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Chromatin disruption and modification

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Phytochromes and photomorphogenesis in Arabidopsis.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Arabidopsis bZIP protein HY5 directly interacts with light-responsive promoters in mediating light control of gene expression.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Light control of plant development

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

The Arabidopsis HY5 gene encodes a bZIP protein that regulates stimulus-induced development of root and hypocotyl

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Genetic and molecular analysis of an allelic series of cop1 mutants suggests functional roles for the multiple protein domains.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Arabidopsis COP8, COP10, and COP11 genes are involved in repression of photomorphogenic development in darkness.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

DET1, a negative regulator of light-mediated development and gene expression in arabidopsis, encodes a novel nuclear-localized protein

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Mutations in the DET1 gene affect cell-type-specific expression of light-regulated genes and chloroplast development in Arabidopsis

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

cop1: a regulatory locus involved in light-controlled development and gene expression in Arabidopsis.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2492627

Arabidopsis GCN5, HD1, and TAF1/HAF2 interact to regulate histone acetylation required for light-responsive gene expression

26 August 2018

1 reference

12 December 2020

Targeted histone acetylation and altered nuclease accessibility over short regions of the pea plastocyanin gene

1 reference

12 December 2020

Profiling histone modification patterns in plants using genomic tiling microarrays

1 reference

12 December 2020

A positive role for histone acetylation in transcription factor access to nucleosomal DNA

1 reference

12 December 2020

Phytochrome D acts in the shade-avoidance syndrome in Arabidopsis by controlling elongation growth and flowering time

1 reference

12 December 2020

Regulation of flowering time by histone acetylation in Arabidopsis

1 reference

12 December 2020

The Photomorphogenesis Regulator DET1 Binds the Amino-Terminal Tail of Histone H2B in a Nucleosome Context

1 reference

12 December 2020

Phytochrome E influences internode elongation and flowering time in Arabidopsis

1 reference

12 December 2020

Isolation of Arabidopsis nuclei and measurement of gene transcription rates using nuclear run-on assays

1 reference

12 December 2020

Identifiers

DOI

10.1104/PP.108.122929

1 reference

26 December 2017

release_gcbup4vjdje5dlgr2f4kzm2zqi

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/gcbup4vjdje5dlgr2f4kzm2zqi

24 November 2022

mapped directly with Wikidata item

0 references

1 reference

26 December 2017