(Q46934956)

26 December 2017

title

RNA-seq reveals transcriptomic shock involving transposable elements reactivation in hybrids of young lake whitefish species (English)

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26 December 2017

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Sébastien Renaut

2

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Louis Bernatchez

series ordinal

4

object named as

Louis Bernatchez

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26 December 2017

1

Anne-Marie Dion-Côté

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26 December 2017

author name string

Eric Normandeau

series ordinal

3

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26 December 2017

publication date

6 February 2014

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26 December 2017

Molecular Biology and Evolution

published in

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26 December 2017

volume

31

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26 December 2017

issue

5

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26 December 2017

page(s)

1188-1199

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26 December 2017

Hybridization and speciation

cites work

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

A rapidly evolving MYB-related protein causes species isolation in Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Human LINE-1 retrotransposon induces DNA damage and apoptosis in cancer cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

On the origin of species: insights from the ecological genomics of lake whitefish

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

The transcriptional landscape of cross-specific hybrids and its possible link with growth in brook charr (Salvelinus fontinalis Mitchill).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

The reality of pervasive transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Framing the Salmonidae family phylogenetic portrait: a more complete picture from increased taxon sampling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Pervasive sex-linked effects on transcription regulation as revealed by expression quantitative trait loci mapping in lake whitefish species pairs (Coregonus sp., Salmonidae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Landscape of transcription in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Variable extent of parallelism in respiratory, circulatory, and neurological traits across lake whitefish species pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

The nucleotypic effects of cellular DNA content in cartilaginous and ray-finned fishes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Targeted sequence capture and resequencing implies a predominant role of regulatory regions in the divergence of a sympatric lake whitefish species pair (Coregonus clupeaformis).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Functions of DNA methylation: islands, start sites, gene bodies and beyond

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Repbase Update, a database of eukaryotic repetitive elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

A universal classification of eukaryotic transposable elements implemented in Repbase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Drosophila interspecific hybrids phenocopy piRNA-pathway mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Adaptation to P element transposon invasion in Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

RNA-seq and microarray complement each other in transcriptome profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Interspecific hybridization increases transposition rates of Osvaldo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Genome clashes in hybrids: insights from gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Chromosome rearrangements and transposable elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

The genetics of hybrid incompatibilities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

What do we need to know about speciation?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Transcriptome analysis of zebrafish embryogenesis using microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

The significance of responses of the genome to challenge

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Epigenetic, transposon and small RNA determinants of hybrid dysfunctions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

REVERSIBILITY IN EVOLUTION CONSIDERED FROM THE STANDPOINT OF GENETICS

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

The transcriptional landscape of the yeast genome defined by RNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Divergence in gene regulation at young life history stages of whitefish (Coregonus sp.) and the emergence of genomic isolation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Divergent host plant adaptation and reproductive isolation between ecotypes of Timema cristinae walking sticks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Ecological explanations for (incomplete) speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

The genes underlying the process of speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

MULTIPLE MODES OF SPECIATION INVOLVED IN THE PARALLEL EVOLUTION OF SYMPATRIC MORPHOTYPES OF LAKE WHITEFISH (COREGONUS CLUPEAFORMIS, SALMONIDAE).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Adaptive evolution drives divergence of a hybrid inviability gene between two species of Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Transcriptome-wide signature of hybrid breakdown associated with intrinsic reproductive isolation in lake whitefish species pairs (Coregonus spp. Salmonidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Gene expression divergence and hybrid misexpression between lake whitefish species pairs (Coregonus spp. Salmonidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

EMBOSS: the European Molecular Biology Open Software Suite

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

The genetic architecture of ecological speciation and the association with signatures of selection in natural lake whitefish (Coregonus sp. Salmonidae) species pairs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

The genetic basis of intrinsic and extrinsic post-zygotic reproductive isolation jointly promoting speciation in the lake whitefish species complex (Coregonus clupeaformis).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

The molecular basis of P-M hybrid dysgenesis: the nature of induced mutations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

21 January 2018

Ecological speciation

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Ecology and genetics of speciation in Ficedula flycatchers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Evolutionary origin and molecular biology of the melanoma-inducing oncogene of Xiphophorus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Evidence for ecological speciation and its alternative

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

ABySS: a parallel assembler for short read sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Transposable elements and the epigenetic regulation of the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

The transcriptomics of life-history trade-offs in whitefish species pairs (Coregonus sp.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Genome differentiation in a species pair of coregonine fishes: an extremely rapid speciation driven by stress-activated retrotransposons mediating extensive ribosomal DNA multiplications.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Significance analysis of microarrays applied to the ionizing radiation response

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Genome expansion in three hybrid sunflower species is associated with retrotransposon proliferation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

The genetic mosaic suggests a new role for hitchhiking in ecological speciation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

The phenomics and expression quantitative trait locus mapping of brain transcriptomes regulating adaptive divergence in lake whitefish species pairs (Coregonus sp.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Novel putative receptor tyrosine kinase encoded by the melanoma-inducing Tu locus in Xiphophorus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Indirect evolution of hybrid lethality due to linkage with selected locus in Mimulus guttatus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

Hybrid speciation accompanied by genomic reorganization in wild sunflowers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU069

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSU069

1 reference

26 December 2017

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26 December 2017