(Q47035974)

http://europepmc.org/abstract/PMC/5687303

17 June 2018

title

Two independent modes of chromatin organization revealed by cohesin removal (English)

1 reference

http://europepmc.org/abstract/PMC/5687303

17 June 2018

main subject

NIPBL cohesin loading factor

1 reference

GOA release 2020-03-11

author

Wolfgang Huber

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Nezar Abdennur

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Anton Goloborodko

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Aleksandra Pękowska

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Nuno A. Fonseca

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Christian Häring

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Francois Spitz

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

author name string

Wibke Schwarzer

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Geoffrey Fudenberg

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Yann Loe-Mie

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Leonid Mirny

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

language of work or name

English

0 references

publication date

27 September 2017

1 reference

http://europepmc.org/abstract/PMC/5687303

17 June 2018

published in

Nature

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

volume

551

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

issue

7678

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

page(s)

51-56

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/nature24281

7 June 2020

exact match

0 references

cites work

Scc2/Nipbl hops between chromosomal cohesin rings after loading

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Chromatin Domains: The Unit of Chromosome Organization

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Formation of Chromosomal Domains by Loop Extrusion.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Compaction and segregation of sister chromatids via active loop extrusion

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

The 3D Genome as Moderator of Chromosomal Communication

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Chromatin and RNA Maps Reveal Regulatory Long Noncoding RNAs in Mouse.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

CTCF Binding Polarity Determines Chromatin Looping.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Biological chromodynamics: a general method for measuring protein occupancy across the genome by calibrating ChIP-seq.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

HISAT: a fast spliced aligner with low memory requirements

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

The Hitchhiker's guide to Hi-C analysis: practical guidelines

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

A comparative encyclopedia of DNA elements in the mouse genome

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

HTSeq--a Python framework to work with high-throughput sequencing data

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Identification of alternative topological domains in chromatin

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Organization of the mitotic chromosome

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Cohesin-mediated interactions organize chromosomal domain architecture

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Wapl is an essential regulator of chromatin structure and chromosome segregation

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Segmental folding of chromosomes: a basis for structural and regulatory chromosomal neighborhoods?

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Regional chromatin decompaction in Cornelia de Lange syndrome associated with NIPBL disruption can be uncoupled from cohesin and CTCF.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Architectural protein subclasses shape 3D organization of genomes during lineage commitment

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Genome architecture: domain organization of interphase chromosomes

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

OpenMM 4: A Reusable, Extensible, Hardware Independent Library for High Performance Molecular Simulation

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

STAR: ultrafast universal RNA-seq aligner

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

GENCODE: the reference human genome annotation for The ENCODE Project

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Iterative correction of Hi-C data reveals hallmarks of chromosome organization

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

A map of the cis-regulatory sequences in the mouse genome

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Spatial partitioning of the regulatory landscape of the X-inactivation centre

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Topological domains in mammalian genomes identified by analysis of chromatin interactions

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Three-dimensional folding and functional organization principles of the Drosophila genome

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Genome architectures revealed by tethered chromosome conformation capture and population-based modeling

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Mapping and analysis of chromatin state dynamics in nine human cell types

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Cohesin: its roles and mechanisms

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Efficient nonbonded interactions for molecular dynamics on a graphics processing unit

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Multiple organ system defects and transcriptional dysregulation in the Nipbl(+/-) mouse, a model of Cornelia de Lange Syndrome

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Improved isolation of murine hepatocytes for in vitro malaria liver stage studies

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Live-cell imaging reveals a stable cohesin-chromatin interaction after but not before DNA replication

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Community structure in social and biological networks

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

A Cre/loxP-deleter transgenic line in mouse strain 129S1/SvImJ.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition.

18 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

Isolation and culture of adult mouse hepatocytes

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

A tamoxifen-inducible chimeric Cre recombinase specifically effective in the fetal and adult mouse liver

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5687303

CTCF, WAPL and PDS5 proteins control the formation of TADs and loops by cohesin

15 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE24281

7 January 2021

HiGlass: Web-based Visual Exploration and Analysis of Genome Interaction Maps

1 reference

https://api.crossref.org/works/10.1038%2FNATURE24281

7 January 2021

The condensin complex is a mechanochemical motor that translocates along DNA.

1 reference

https://api.crossref.org/works/10.1038%2FNATURE24281

7 January 2021

Expression of Cre recombinase in the developing mouse limb bud driven by aPrxl enhancer

1 reference

https://api.crossref.org/works/10.1038%2FNATURE24281

7 January 2021

Standardizing chromatin research: a simple and universal method for ChIP-seq.

1 reference

https://api.crossref.org/works/10.1038%2FNATURE24281

7 January 2021

Effects of topological constraints on globular polymers

1 reference

https://api.crossref.org/works/10.1038%2FNATURE24281

7 January 2021

A mechanism of cohesin-dependent loop extrusion organizes zygotic genome architecture.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29094699

12 December 2020

inferred from PubMed ID database lookup

Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29094699

12 December 2020

inferred from PubMed ID database lookup

HiGlass: web-based visual exploration and analysis of genome interaction maps

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29094699

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/NATURE24281

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

7 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29094699%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1 reference