(Q47152412)

http://europepmc.org/abstract/PMC/5677018

9 January 2018

title

The effect of genetic variation on promoter usage and enhancer activity. (English)

1 reference

http://europepmc.org/abstract/PMC/5677018

9 January 2018

author

Olivier Delaneau

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Federico A Santoni

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Piero Carninci

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1

Marco Garieri

1 reference

7 June 2020

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

Richard J Fish

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

David Mull

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Emmanouil T Dermitzakis

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Stylianos E Antonarakis

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

Alexandre Fort

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

language of work or name

English

0 references

publication date

7 November 2017

1 reference

http://europepmc.org/abstract/PMC/5677018

9 January 2018

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

page(s)

1358

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

7 June 2020

copyright license

start time

7 November 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/s41467-017-01467-7

0 references

cites work

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23 May 2018

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23 May 2018

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Mapping eQTLs with RNA-seq reveals novel susceptibility genes, non-coding RNAs and alternative-splicing events in systemic lupus erythematosus

23 May 2018

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Comprehensive promoter level expression quantitative trait loci analysis of the human frontal lobe

23 May 2018

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Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits

23 May 2018

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Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay

23 May 2018

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High density methylation QTL analysis in human blood via next-generation sequencing of the methylated genomic DNA fraction

23 May 2018

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Alternative Splicing QTLs in European and African Populations

23 May 2018

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Massively parallel quantification of the regulatory effects of noncoding genetic variation in a human cohort

23 May 2018

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23 May 2018

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Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells

23 May 2018

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Tissue-specific effects of genetic and epigenetic variation on gene regulation and splicing

23 May 2018

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TagDust2: a generic method to extract reads from sequencing data

23 May 2018

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A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

23 May 2018

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Partitioning heritability of regulatory and cell-type-specific variants across 11 common diseases

23 May 2018

1 reference

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Genetic and epigenetic fine mapping of causal autoimmune disease variants

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Identification of genetic variants associated with alternative splicing using sQTLseekeR.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

A promoter-level mammalian expression atlas

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

An atlas of active enhancers across human cell types and tissues

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Sequencing depth and coverage: key considerations in genomic analyses

23 May 2018

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The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Genetic and epigenetic regulation of human lincRNA gene expression

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Combinatorial effects of multiple enhancer variants in linkage disequilibrium dictate levels of gene expression to confer susceptibility to common traits

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Transcriptome and genome sequencing uncovers functional variation in humans

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Human disease-associated genetic variation impacts large intergenic non-coding RNA expression

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

An integrated map of genetic variation from 1,092 human genomes

23 May 2018

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GENCODE: the reference human genome annotation for The ENCODE Project

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Systematic localization of common disease-associated variation in regulatory DNA

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Landscape of transcription in human cells

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

An integrated encyclopedia of DNA elements in the human genome

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Topological domains in mammalian genomes identified by analysis of chromatin interactions

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

ChromHMM: automating chromatin-state discovery and characterization

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Enhancer function: new insights into the regulation of tissue-specific gene expression

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Widespread transcription at neuronal activity-regulated enhancers

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Candidate causal regulatory effects by integration of expression QTLs with complex trait genetic associations

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Common regulatory variation impacts gene expression in a cell type-dependent manner

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

A flexible and accurate genotype imputation method for the next generation of genome-wide association studies

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Disentangling molecular relationships with a causal inference test

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Fast and accurate short read alignment with Burrows-Wheeler transform

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

A code for transcription initiation in mammalian genomes

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Population genomics of human gene expression

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

CAGE: cap analysis of gene expression

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Statistical significance for genomewide studies

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

cis-Acting Complex-Trait-Associated lincRNA Expression Correlates with Modulation of Chromosomal Architecture.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Promoter shape varies across populations and affects promoter evolution and expression noise.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Improved whole-chromosome phasing for disease and population genetic studies

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5677018

Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes

15 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41467-017-01467-7

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/S41467-017-01467-7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

7 June 2020

ADS bibcode

2017NatCo...8.1358G

0 references

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29116076%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1 reference