(Q47170609)

http://europepmc.org/abstract/PMC/5707364

10 January 2018

title

Contributions of Zea mays subspecies mexicana haplotypes to modern maize (English)

1 reference

http://europepmc.org/abstract/PMC/5707364

10 January 2018

1 reference

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

author name string

Ning Yang

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Xi-Wen Xu

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Rui-Ru Wang

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Wen-Lei Peng

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Lichun Cai

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Jia-Ming Song

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Wenqiang Li

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Xin Luo

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Luyao Niu

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Yuebin Wang

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Min Jin

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Lu Chen

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Jingyun Luo

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Min Deng

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Long Wang

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Qingchun Pan

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Feng Liu

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Xiaohong Yang

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Ling-Ling Chen

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Jianbing Yan

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

language of work or name

English

0 references

publication date

30 November 2017

1 reference

http://europepmc.org/abstract/PMC/5707364

10 January 2018

published in

Nature Communications

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

volume

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

page(s)

1874

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

11 June 2020

copyright license

start time

30 November 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1038/s41467-017-02063-5

0 references

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GmHs1-1, encoding a calcineurin-like protein, controls hard-seededness in soybean

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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

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Genome-wide patterns and properties of de novo mutations in humans

23 May 2018

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Genome Alignment Spanning Major Poaceae Lineages Reveals Heterogeneous Evolutionary Rates and Alters Inferred Dates for Key Evolutionary Events

23 May 2018

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High-resolution genetic mapping of maize pan-genome sequence anchors.

23 May 2018

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Non-crossover gene conversions show strong GC bias and unexpected clustering in humans

23 May 2018

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Dissecting meiotic recombination based on tetrad analysis by single-microspore sequencing in maize

23 May 2018

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A maize wall-associated kinase confers quantitative resistance to head smut.

23 May 2018

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UniProt: a hub for protein information

23 May 2018

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A powerful tool for genome analysis in maize: development and evaluation of the high density 600 k SNP genotyping array.

23 May 2018

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Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data

23 May 2018

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Combined linkage and association mapping reveals candidates for Scmv1, a major locus involved in resistance to sugarcane mosaic virus (SCMV) in maize

23 May 2018

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The MaSuRCA genome assembler

23 May 2018

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Copy number polymorphism in plant genomes

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Complex patterns of local adaptation in teosinte

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

The genomic signature of crop-wild introgression in maize

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Improving the accuracy and efficiency of identity-by-descent detection in population data

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

GapFiller: a de novo assembly approach to fill the gap within paired reads

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Predicting the functional effect of amino acid substitutions and indels

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Teosinte as a model system for population and ecological genomics

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Estimating the human mutation rate using autozygosity in a founder population

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Genome-wide genetic changes during modern breeding of maize

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Comparative population genomics of maize domestication and improvement

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

A large maize (Zea mays L.) SNP genotyping array: development and germplasm genotyping, and genetic mapping to compare with the B73 reference genome

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Variation in the mutation rate across mammalian genomes

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Pervasive multinucleotide mutational events in eukaryotes

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Mapping copy number variation by population-scale genome sequencing

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Genetic signals of origin, spread, and introgression in a large sample of maize landraces.

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Scaffolding pre-assembled contigs using SSPACE

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

The B73 Maize Genome: Complexity, Diversity, and Dynamics

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Genetic properties of the maize nested association mapping population

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

The Sequence Alignment/Map format and SAMtools

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Fast and accurate short read alignment with Burrows-Wheeler transform

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Starch grain and phytolith evidence for early ninth millennium B.P. maize from the Central Balsas River Valley, Mexico

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

The Sorghum bicolor genome and the diversification of grasses

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Boron-toxicity tolerance in barley arising from efflux transporter amplification

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Evidence for mutation showers

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Variation in mutation dynamics across the maize genome as a function of regional and flanking base composition

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Evolution of DNA sequence nonhomologies among maize inbreds

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

CARHTA GENE: multipopulation integrated genetic and radiation hybrid mapping

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

The inheritance and evolution of leaf pigmentation and pubescence in teosinte

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Versatile and open software for comparing large genomes

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Maize genome sequencing by methylation filtration

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Human SNP variability and mutation rate are higher in regions of high recombination

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Recombination rates between adjacent genic and retrotransposon regions in maize vary by 2 orders of magnitude

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

InterProScan--an integration platform for the signature-recognition methods in InterPro

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Precision mapping of quantitative trait loci

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Evolutionary consequences of nonrandom damage and repair of chromatin domains

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

A study of allelic diversity underlying flowering-time adaptation in maize landraces

23 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Genome-wide recombination dynamics are associated with phenotypic variation in maize

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Parent-progeny sequencing indicates higher mutation rates in heterozygotes.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Genome-Wide Mapping of Structural Variations Reveals a Copy Number Variant That Determines Reproductive Morphology in Cucumber.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Dissecting plant genomes with the PLAZA comparative genomics platform

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Synteny and Collinearity in Plant Genomes

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5707364

Duplications That Suppress and Deletions That Restore Expression from a Chalcone Synthase Multigene Family

29 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41467-017-02063-5

inferred from DOI database lookup

7 January 2021

based on heuristic

Selective constraints on codon usage of nuclear genes from Arabidopsis thaliana

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41467-017-02063-5

inferred from DOI database lookup

7 January 2021

based on heuristic

Construction of the third generation Zea mays haplotype map.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29187731

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/S41467-017-02063-5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29187731%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

PubMed publication ID

29187731

1 reference