(Q30358262)

20 October 2017

Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map data (English)

1 reference

20 October 2017

1 reference

5

1 reference

20 October 2017

Lina M Quesada-Ocampo

14

1 reference

20 October 2017

Tsuyoshi Tanaka

8

0 references

Kevin L. Childs

object named as

Kevin L Childs

11

0 references

John P Hamilton

object named as

John P Hamilton

3

0 references

Takeshi Itoh

object named as

Takeshi Itoh

20

0 references

author name string

Yoshihiro Kawahara

1

1 reference

20 October 2017

Melissa de la Bastide

2

1 reference

20 October 2017

Hiroyuki Kanamori

4

1 reference

20 October 2017

Shu Ouyang

6

1 reference

20 October 2017

David C Schwartz

7

1 reference

20 October 2017

Jianzhong Wu

9

1 reference

20 October 2017

Shiguo Zhou

10

1 reference

20 October 2017

Rebecca M Davidson

12

1 reference

20 October 2017

Haining Lin

13

1 reference

20 October 2017

Brieanne Vaillancourt

15

1 reference

20 October 2017

Hiroaki Sakai

16

1 reference

20 October 2017

Sung Shin Lee

17

1 reference

20 October 2017

Jungsok Kim

18

1 reference

20 October 2017

Hisataka Numa

19

1 reference

20 October 2017

C Robin Buell

21

1 reference

20 October 2017

Takashi Matsumoto

22

1 reference

20 October 2017

6 February 2013

1 reference

20 October 2017

1 reference

20 October 2017

6

1 reference

20 October 2017

1

1 reference

20 October 2017

4

1 reference

https://scigraph.springernature.com/pub.10.1186/1939-8433-6-4

20 October 2017

0 references

cites work

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

High-resolution human genome structure by single-molecule analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

Massive gene losses in Asian cultivated rice unveiled by comparative genome analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

The rate and molecular spectrum of spontaneous mutations in Arabidopsis thaliana

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

Genetic properties of the maize nested association mapping population

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

The Sequence Alignment/Map format and SAMtools

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

Fast and accurate short read alignment with Burrows-Wheeler transform

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

The Rice Annotation Project Database (RAP-DB): 2008 update

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

Validation of rice genome sequence by optical mapping

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

MIPSPlantsDB--plant database resource for integrative and comparative plant genome research

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

The TIGR Rice Genome Annotation Resource: improvements and new features

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

The map-based sequence of the rice genome

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

The generic genome browser: a building block for a model organism system database

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

A greedy algorithm for aligning DNA sequences

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

Rapid isolation of high molecular weight plant DNA

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

B73-Mo17 near-isogenic lines demonstrate dispersed structural variation in maize

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

Genome-wide association studies of 14 agronomic traits in rice landraces.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

Alignment of optical maps.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

Quantification of total genomic DNA and selected repetitive sequences reveals concurrent changes in different DNA families in indica and japonica rice

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5395016

Independent domestication of Asian rice followed by gene flow from japonica to indica

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24280374

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1939-8433-6-4

1 reference

Dimensions Publication ID

20 October 2017

0 references

1 reference

20 October 2017

1 reference