(Q47285155)

13 January 2018

title

Natural selection during functional divergence to LMP7 and proteasome subunit X (PSMB5) following gene duplication (English)

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13 January 2018

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David H Bos

1

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13 January 2018

publication date

1 February 2005

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13 January 2018

Journal of Molecular Evolution

published in

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13 January 2018

volume

60

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13 January 2018

issue

2

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13 January 2018

page(s)

221-228

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13 January 2018

Preservation of duplicate genes by complementary, degenerative mutations

cites work

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12 December 2020

Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution

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12 December 2020

Evidence of en bloc duplication in vertebrate genomes

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12 December 2020

Codon-substitution models for heterogeneous selection pressure at amino acid sites

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12 December 2020

MHC-linked LMP gene products specifically alter peptidase activities of the proteasome

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12 December 2020

Functional divergence prediction from evolutionary analysis: a case study of vertebrate hemoglobin

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Positive Darwinian selection after gene duplication in primate ribonuclease genes

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12 December 2020

Accelerated evolution in the reactive centre regions of serine protease inhibitors

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12 December 2020

Estimating synonymous and nonsynonymous substitution rates

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12 December 2020

Reliabilities of parsimony-based and likelihood-based methods for detecting positive selection at single amino acid sites.

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12 December 2020

Proteasome from Thermoplasma acidophilum: a threonine protease

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12 December 2020

Structure and functions of the 20S and 26S proteasomes

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A codon-based model of nucleotide substitution for protein-coding DNA sequences

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12 December 2020

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

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12 December 2020

Chromosomal localization of the proteasome Z subunit gene reveals an ancient chromosomal duplication involving the major histocompatibility complex

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12 December 2020

The structure of the mammalian 20S proteasome at 2.75 A resolution

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12 December 2020

Evolution of duplicate genes in a tetraploid animal, Xenopus laevis

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12 December 2020

Protein degradation and the generation of MHC class I-presented peptides.

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12 December 2020

The mouse genes encoding the third pair of beta-type proteasome subunits regulated reciprocally by IFN-gamma: structural comparison, chromosomal localization, and analysis of the promoter

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12 December 2020

Inhibitors of the proteasome block the degradation of most cell proteins and the generation of peptides presented on MHC class I molecules

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12 December 2020

Discrete cleavage motifs of constitutive and immunoproteasomes revealed by quantitative analysis of cleavage products

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12 December 2020

Interferon gamma stimulation modulates the proteolytic activity and cleavage site preference of 20S mouse proteasomes

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12 December 2020

Isolation of low molecular mass polypeptide complementary DNA clones from primitive vertebrates. Implications for the origin of MHC class I-restricted antigen presentation

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An index of substitution saturation and its application

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12 December 2020

Convergent neofunctionalization by positive Darwinian selection after ancient recurrent duplications of the xanthine dehydrogenase gene

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12 December 2020

cDNA cloning and interferon gamma down-regulation of proteasomal subunits X and Y

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12 December 2020

Genetic redundancy in vertebrates: polyploidy and persistence of genes encoding multidomain proteins

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12 December 2020

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

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12 December 2020

Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 A resolution

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12 December 2020

Selection and gene duplication: a view from the genome

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12 December 2020

Sequencing of amphioxus PSMB5/8 gene and phylogenetic position of agnathan sequences

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12 December 2020

Bioinformatic analysis of functional differences between the immunoproteasome and the constitutive proteasome

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12 December 2020

Evolution of the proteasome components

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12 December 2020

Structure of 20S proteasome from yeast at 2.4 A resolution

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12 December 2020

Extensive genomic duplication during early chordate evolution

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12 December 2020

Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution

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12 December 2020

Identification and Characterization of a Proteasome Subunit Cluster in the Japanese Pufferfish (Fugu rubripes)

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12 December 2020

Splitting pairs: the diverging fates of duplicated genes

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12 December 2020

How often do duplicated genes evolve new functions?

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12 December 2020

The active sites of the eukaryotic 20 S proteasome and their involvement in subunit precursor processing

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12 December 2020

The structural basis of molecular adaptation

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12 December 2020

Peptidase activities of proteasomes are differentially regulated by the major histocompatibility complex-encoded genes for LMP2 and LMP7.

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12 December 2020

The evolutionary fate and consequences of duplicate genes

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12 December 2020

Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution

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12 December 2020

Comparative genomics of the MHC: glimpses into the evolution of the adaptive immune system

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12 December 2020

Identification of the yeast 20S proteasome catalytic centers and subunit interactions required for active-site formation

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12 December 2020

The evolution of functionally novel proteins after gene duplication.

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12 December 2020

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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12 December 2020

10.1007/S00239-004-0120-X

Identifiers

DOI

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13 January 2018

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13 January 2018