(Q47446833)

20 February 2018

title

Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut. (English)

1 reference

20 February 2018

single cell transcriptomics

1 reference

1 reference

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

11

1 reference

20 February 2018

author name string

Charles A Herring

1

1 reference

20 February 2018

Amrita Banerjee

2

1 reference

20 February 2018

Eliot T McKinley

3

1 reference

20 February 2018

Alan J Simmons

4

1 reference

20 February 2018

Jie Ping

5

1 reference

20 February 2018

Joseph T Roland

6

1 reference

20 February 2018

Jeffrey L Franklin

7

1 reference

20 February 2018

Qi Liu

8

1 reference

20 February 2018

Michael J Gerdes

9

1 reference

20 February 2018

Robert J Coffey

10

1 reference

20 February 2018

publication date

7 November 2017

1 reference

20 February 2018

external data available at URL

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE102698

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

20 February 2018

volume

6

1 reference

20 February 2018

issue

1

1 reference

20 February 2018

page(s)

37-51.e9

1 reference

20 February 2018

describes a project that uses

colon

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5799016/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

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Tuft cells, taste-chemosensory cells, orchestrate parasite type 2 immunity in the gut.

22 May 2018

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Replacement of Lost Lgr5-Positive Stem Cells through Plasticity of Their Enterocyte-Lineage Daughters

22 May 2018

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Intestinal epithelial tuft cells initiate type 2 mucosal immunity to helminth parasites

22 May 2018

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Tuft-cell-derived IL-25 regulates an intestinal ILC2-epithelial response circuit

22 May 2018

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Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors

22 May 2018

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Cytometry-based single-cell analysis of intact epithelial signaling reveals MAPK activation divergent from TNF-α-induced apoptosis in vivo.

22 May 2018

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22 May 2018

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Single-Cell RNA-Seq with Waterfall Reveals Molecular Cascades underlying Adult Neurogenesis

22 May 2018

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Single-cell messenger RNA sequencing reveals rare intestinal cell types

22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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ADAM10 regulates Notch function in intestinal stem cells of mice

22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

22 May 2018

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22 May 2018

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Long-lived intestinal tuft cells serve as colon cancer-initiating cells

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Broadly permissive intestinal chromatin underlies lateral inhibition and cell plasticity.

22 May 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Network analysis of differential Ras isoform mutation effects on intestinal epithelial responses to TNF-α.

22 May 2018

1 reference

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Highly multiplexed single-cell analysis of formalin-fixed, paraffin-embedded cancer tissue

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Normalization of mass cytometry data with bead standards

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Multi-scale in vivo systems analysis reveals the influence of immune cells on TNF-α-induced apoptosis in the intestinal epithelium

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Dll1+ secretory progenitor cells revert to stem cells upon crypt damage

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

The pan-ErbB negative regulator Lrig1 is an intestinal stem cell marker that functions as a tumor suppressor

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Identification of a cKit(+) colonic crypt base secretory cell that supports Lgr5(+) stem cells in mice

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Notch signaling modulates proliferation and differentiation of intestinal crypt base columnar stem cells.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Intestinal development and differentiation.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Mechanisms of T cell development and transformation.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Distinct ATOH1 and Neurog3 requirements define tuft cells as a new secretory cell type in the intestinal epithelium.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Paneth cells constitute the niche for Lgr5 stem cells in intestinal crypts

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Mouse atonal homolog 1 directs intestinal progenitors to secretory cell rather than absorptive cell fate

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

CD27 is a thymic determinant of the balance between interferon-gamma- and interleukin 17-producing gammadelta T cell subsets

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Stem cells, self-renewal, and differentiation in the intestinal epithelium

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Identification of stem cells in small intestine and colon by marker gene Lgr5

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

SOX9 is required for the differentiation of paneth cells in the intestinal epithelium

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Gfi1 functions downstream of Math1 to control intestinal secretory cell subtype allocation and differentiation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Taste receptor-like cells in the rat gut identified by expression of alpha-gustducin

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Dclk1-expressing tuft cells: critical modulators of the intestinal niche?

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Intestinal label-retaining cells are secretory precursors expressing Lgr5.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Origin of the brush cell lineage in the mouse intestinal epithelium.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Murine intestinal cells expressing Trpm5 are mostly brush cells and express markers of neuronal and inflammatory cells

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Taste-signaling proteins are coexpressed in solitary intestinal epithelial cells.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5799016

Single Cell Analysis of Human Tissues and Solid Tumors with Mass Cytometry

14 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29153838

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Notch signals control the fate of immature progenitor cells in the intestine

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/29153838

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELS.2017.10.012

1 reference

20 February 2018

PMC publication ID

5799016

1 reference

20 February 2018

PubMed publication ID

29153838

1 reference

20 February 2018