(Q47568139)

4 February 2018

title

'Y'Scenedesmus (Chlorophyta, Chlorophyceae): the internal transcribed spacer 2 rRNA secondary structure re-revisited (English)

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4 February 2018

main subject

Chlorophyceae

object named as

Chlorophyceae

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S M Markert

1

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4 February 2018

T Müller

2

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4 February 2018

C Koetschan

3

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4 February 2018

T Friedl

4

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4 February 2018

M Wolf

5

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4 February 2018

publication date

28 May 2012

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4 February 2018

published in

Plant Biology

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4 February 2018

volume

14

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4 February 2018

issue

6

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4 February 2018

page(s)

987-996

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4 February 2018

Internal transcribed spacer 2 (nu ITS2 rRNA) sequence-structure phylogenetics: towards an automated reconstruction of the green algal tree of life

cites work

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

Dynamic conformational model for the role of ITS2 in pre-rRNA processing in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

VARNA: Interactive drawing and editing of the RNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

Hylodesmus singaporensis gen. et sp. nov., a new autosporic subaerial green alga (Scenedesmaceae, Chlorophyta) from Singapore.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

Confidence Limits on Phylogenies: an Approach using the Bootstrap

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

RNA movies: visualizing RNA secondary structure spaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

Ribosomal internal transcribed spacer 2 (ITS2) exhibits a common core of secondary structure in vertebrates and yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

ITS2 data corroborate a monophyletic chlorophycean DO-group (Sphaeropleales).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

5.8S-28S rRNA interaction and HMM-based ITS2 annotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

Including RNA secondary structures improves accuracy and robustness in reconstruction of phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

The ITS2 Database III--sequences and structures for phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

Clustal W and Clustal X version 2.0

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

DINAMelt web server for nucleic acid melting prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

UNAFold: software for nucleic acid folding and hybridization

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

Accurate and robust phylogeny estimation based on profile distances: a study of the Chlorophyceae (Chlorophyta)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

21 January 2018

Distinguishing species

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

MODELTEST: testing the model of DNA substitution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

phangorn: phylogenetic analysis in R

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

The internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

The ITS2 Database II: homology modelling RNA structure for molecular systematics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

ProfDistS: (profile-) distance based phylogeny on sequence--structure alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

Mfold web server for nucleic acid folding and hybridization prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

ProfDist: a tool for the construction of large phylogenetic trees based on profile distances

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1438-8677.2012.00576.X

10.1111/J.1438-8677.2012.00576.X

21 January 2018

Identifiers

DOI

1 reference

4 February 2018

1 reference

4 February 2018