(Q47827615)

6 February 2018

title

NetMHCstab - predicting stability of peptide-MHC-I complexes; impacts for cytotoxic T lymphocyte epitope discovery. (English)

1 reference

6 February 2018

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3

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6 February 2018

Morten Nielsen

series ordinal

4

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6 February 2018

author name string

Kasper W Jørgensen

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1

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6 February 2018

Michael Rasmussen

series ordinal

2

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6 February 2018

publication date

1 January 2014

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6 February 2018

number of pages

9

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inferred from page(s)

published in

Immunology

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6 February 2018

volume

141

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6 February 2018

issue

1

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6 February 2018

page(s)

18-26

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6 February 2018

Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

Peptide-MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

Predictions versus high-throughput experiments in T-cell epitope discovery: competition or synergy?

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

NetMHCcons: a consensus method for the major histocompatibility complex class I predictions

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

UniProt Knowledgebase: a hub of integrated protein data

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

HLArestrictor--a tool for patient-specific predictions of HLA restriction elements and optimal epitopes within peptides

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

Real-time, high-throughput measurements of peptide-MHC-I dissociation using a scintillation proximity assay

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

Major histocompatibility complex class I binding predictions as a tool in epitope discovery.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

NetCTLpan: pan-specific MHC class I pathway epitope predictions

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

The immune epitope database 2.0.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

A comparative study of HLA binding affinity and ligand diversity: implications for generating immunodominant CD8+ T cell responses

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

NetMHCpan, a method for MHC class I binding prediction beyond humans

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

The peptide-binding specificity of HLA-A*3001 demonstrates membership of the HLA-A3 supertype

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

A quantitative analysis of the variables affecting the repertoire of T cell specificities recognized after vaccinia virus infection

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

Definition of supertypes for HLA molecules using clustering of specificity matrices.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

SYFPEITHI: database for MHC ligands and peptide motifs

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

The relation between major histocompatibility complex (MHC) restriction and the capacity of Ia to bind immunogenic peptides

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

Sequence motifs important for peptide binding to the human MHC class I molecule, HLA-A2

26 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3893846

On Information and Sufficiency

26 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1111%2FIMM.12160

Immunogenicity of peptides bound to MHC class I molecules depends on the MHC-peptide complex stability

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23927693

12 December 2020

inferred from PubMed ID database lookup

MHC class I/peptide stability: implications for immunodominance, in vitro proliferation, and diversity of responding CTL

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23927693

12 December 2020

inferred from PubMed ID database lookup

The kinetic stability of MHC class II:peptide complexes is a key parameter that dictates immunodominance

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23927693

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1111/IMM.12160

1 reference

6 February 2018

PMC publication ID

3893846

0 references

1 reference

6 February 2018