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Major histocompatibility complex class I binding predictions as a tool in epitope discovery.
scientific article published on 26 May 2010
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20518827
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review article
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title
Major histocompatibility complex class I binding predictions as a tool in epitope discovery
(English)
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Europe PubMed Central
PubMed publication ID
20518827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20518827%20AND%20SRC:MED&resulttype=core&format=json
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4 February 2020
author
Ole Lund
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2
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20518827
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4 February 2020
Soren Buus
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3
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PubMed publication ID
20518827
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4 February 2020
Morten Nielsen
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20518827
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4 February 2020
Claus Lundegaard
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Claus Lundegaard
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PubMed publication ID
20518827
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4 February 2020
publication date
26 May 2010
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Europe PubMed Central
PubMed publication ID
20518827
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20518827%20AND%20SRC:MED&resulttype=core&format=json
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4 February 2020
published in
Immunology
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Europe PubMed Central
PubMed publication ID
20518827
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20518827%20AND%20SRC:MED&resulttype=core&format=json
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4 February 2020
volume
130
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Europe PubMed Central
PubMed publication ID
20518827
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20518827%20AND%20SRC:MED&resulttype=core&format=json
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4 February 2020
issue
3
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Europe PubMed Central
PubMed publication ID
20518827
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20518827%20AND%20SRC:MED&resulttype=core&format=json
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4 February 2020
page(s)
309-318
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Europe PubMed Central
PubMed publication ID
20518827
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20518827%20AND%20SRC:MED&resulttype=core&format=json
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4 February 2020
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
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1 September 2018
Reliable prediction of T-cell epitopes using neural networks with novel sequence representations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
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1 September 2018
Prediction of MHC class I binding peptides, using SVMHC
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
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1 September 2018
In vivo depletion of CD11c+ dendritic cells abrogates priming of CD8+ T cells by exogenous cell-associated antigens
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
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1 September 2018
Prediction of MHC class I binding peptides using profile motifs.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
retrieved
1 September 2018
Quantitative predictions of peptide binding to MHC class I molecules using specificity matrices and anchor-stratified calibrations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
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1 September 2018
An automated prediction of MHC class I-binding peptides based on positional scanning with peptide libraries
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
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1 September 2018
Poor correspondence between predicted and experimental binding of peptides to class I MHC molecules
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
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1 September 2018
SYFPEITHI: database for MHC ligands and peptide motifs
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
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1 September 2018
Immunodominance in major histocompatibility complex class I-restricted T lymphocyte responses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
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1 September 2018
Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
retrieved
1 September 2018
Soluble tapasin restores MHC class I expression and function in the tapasin-negative cell line .220.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
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1 September 2018
Peptide binding specificity of major histocompatibility complex class I resolved into an array of apparently independent subspecificities: quantitation by peptide libraries and improved prediction of binding.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
retrieved
1 September 2018
Direct detection of major histocompatibility complex class I binding to antigenic peptides using surface plasmon resonance. Peptide immobilization and characterization of binding specificity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
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1 September 2018
A quantitative assay to measure the interaction between immunogenic peptides and purified class I major histocompatibility complex molecules
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
retrieved
1 September 2018
Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
retrieved
1 September 2018
Prominent role of secondary anchor residues in peptide binding to HLA-A2.1 molecules
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
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1 September 2018
MHC ligands and peptide motifs: first listing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
retrieved
1 September 2018
A method to quantify binding of unlabeled peptides to class I MHC molecules and detect their allele specificity.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
retrieved
1 September 2018
Receptor-ligand interactions measured by an improved spun column chromatography technique. A high efficiency and high throughput size separation method
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
retrieved
1 September 2018
Several HLA alleles share overlapping peptide specificities.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
retrieved
1 September 2018
Prediction of major histocompatibility complex binding regions of protein antigens by sequence pattern analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
retrieved
1 September 2018
T-immunogenic peptides are constituted of rare sequence patterns. Use in the identification of T epitopes in the human immunodeficiency virus gag protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
retrieved
1 September 2018
The relation between major histocompatibility complex (MHC) restriction and the capacity of Ia to bind immunogenic peptides
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
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1 September 2018
Cellular peptide composition governed by major histocompatibility complex class I molecules.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
retrieved
1 September 2018
Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2913210
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1 September 2018
The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage
1 reference
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Crossref
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https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03300.X
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21 January 2018
Establishment of a quantitative ELISA capable of determining peptide - MHC class I interaction
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1111%2FJ.1365-2567.2010.03300.X
retrieved
21 January 2018
Assembly of MHC class I molecules analyzed in vitro
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20518827
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Role of HLA-A motifs in identification of potential CTL epitopes in human papillomavirus type 16 E6 and E7 proteins
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/20518827
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1111/J.1365-2567.2010.03300.X
1 reference
stated in
Europe PubMed Central
PubMed publication ID
20518827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20518827%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 February 2020
PMC publication ID
2913210
0 references
PubMed publication ID
20518827
1 reference
stated in
Europe PubMed Central
PubMed publication ID
20518827
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20518827%20AND%20SRC:MED&resulttype=core&format=json
retrieved
4 February 2020
ResearchGate publication ID
44645446
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